RNA id: XM_043218397.1


Basic Information

Item Value
RNA id XM_043218397.1
length 3383
RNA type mRNA
GC content 0.47
exon number 14
gene id crtc2
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12728466 ~ 12736517 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTACAGATAACGAATGAGCTTGGCAACGATGTTTACTACAGCCTTCAGGACTGCagtacccacaatgcactgctcACCGTTGTCAAAAGTCTTGCTTTCTTGGGTCACTTATCGAACTCTGGCCGTGTCAGCCAGCTTACTTTCTCTTATTTGACGGAATAATGCATTTGTCGGGCGCGGGCCTTGGGGAAATAGGGCACGGACAGGGGCCCGGAGCAGGACCGGCGCCTGGAAGCTGCAATCCGCGGAAATTCAGCGAGAAAATCGCCCTGCACAACCAGCGACAGGCTGAAGACACAGCCGCTTTCCGAGAGGTTATGATGGACATTACTTCCATCAGGGTTCAGGCCGAGAGAATTCGGCAAACCAGAGACTCGGTCCCGTACTATGGAGGATCGCTGCCAAATGTAAATCAGATCTCAAGATGCTCCACCGAGACCCAGTACCCAAGTTATCTCACCCAGCAGCTCCTAGAAGCAGATGAAGAGTACAGAGATGTCCAGCCCAGTCCTCTCGGCAGGCTGCACAGAAGACACTTTGACAGCGCTCCCTATCTGTCCACGCACCTCTCTCCTCCTCGAGGTCACACCTGGAGACGGAACTGGTCCAGTTGTTCTGCCACTGAGAAGAGCCAGATGGTCCGTCTTCCTCTGACCGCTCTTAACAGAACCAACTCCGACTCAGCCCTCCACACCAGTGTGAGAAACACCCAGCTGCATAGCCACCCGAAATCTGTCCAGACCCTGCACAATCCTCCCAGACACCATGGGTTCGCACATCCTGCACCGCTCATTGAAGAAAATATTCAAGAGGAGACGCAATCTCCCAAACTAAAGAAGTTATCCTCAATGGGACCGTCAGGATGCGAAACGCCTGTTGTTCAcagctTCTCATTTCCCGATCAGCAGGTATCGTCGCTCCCTGTCCCGTCGGCCCTCAGTACGAGCGGCTCTCTTCCAGACCTCTCCAGCCTCCACCTGCCTTCTCCTCTTCCTGTAGGTCAGGATTCTGAGGCCCACAGCGGTGCGGAGCAATTGGGCAACACGTCCACGCACCCCGAAATAATGGCTGACTTTAACCTGCCAGGTCTGTCCTCGTCTCTTCAGGCATCTTTAAGTAATCCATTGCTCCAGTCCTCCCTCAGCAATCCCAACATCCAGAGCTGTCTGAGCAGCCACTCCCTGCCCAGCTCTCTCAGCTCCACGTCTTTGCGTCTGTCACTTAGCAACTCTTCGCTGCAGTCATCACTCAGCAACCAGTCCCTACAGTCCTCTCTCAGTAGCTCTTCCCTGAGTAACCAGTCCGTCCAGTCATCCGCCAGCCGCTGCAGTCACAGCAGCGGGATCGGAGGCTCTCGCTCCTgctcctcttcttctctctctggtTCTCCACGTGTTACAGGCCACGCTCATGCCGCCACGTCGCGCAAGAGAGCCCAGCTCAGCCCACTCATTGTGCCCAGCGTCGGAGAGTCCCGCTGGCAGCATCCCAAGCAGTTTTCACCCACATTGTCTCCAACCATGTCCTCCGTACCCCAGGGTGCTCTCCTCAACCCCAACAAAGTTCCGAAGGAGACGAAGCCACCAGCGTATCCCTGCACTCAACACCTCAGATCCGCTCCTCCGCTGTCCCATCAGCCAATGCGTCAGTATTTCCAGCCAGAGGCACAGCATCAGTCAATCCCAGAGATGGAACAGTGGAGTCAAGATGAGCCCCATCAGCAGACACACAGTCAGACACAACACCaccacactcacaaacacagtCGGCCCCTTCAGCATCATTCGCAACCACACGCTAGATATCATCAACAGTTACTTTATCATTCCCAGACTCACCAACCGCACATCTCACTGCAAGCGCTttcccagcagcagcagcagcagcaagagCATCAAATGTACACACAGTTCCAGTCTCATCAGATACCCCAGGAGCAGTACCAGTGTCCGGGCCAGTGGCAGATGCCATGCCAAGAGGGCCAGTACCAAAAACAACAGCTAACTTTCTCCTCTCCAGGTCAGGAGAAGAACAGGAATCATGTAACCGGCCCGCATGGCTTGCAGCATGCACAAATGAAACGTAGACACTGTATGCAGATGCCAGAAGAACCAAAGCTACTATCTAAGGTTGCTATCCAGGAGACTCCAGGAAAGGGATCAAAAGTCCCTCATTATAATGAAAGTGAAGTAACTGAAGCAAATCCGGGTTTACAGGATAAAAGTTTTGAACTGAACAAGgaatcTTATGTTGGCTTGCATCTAACACCTAGTCAGGCGAAGGCCCTTTCTCAGCAGCTCGGGGTGCTTCAGAAGGAACCTCTAGGTGGCAGTAGAGTGTCAGATCTGAACTGTGAAGCTGCAGAAAGCAAGGAACAGCTAGCACAGAATCAGAGCTACAGTGCAGgagagacacaaaatatgttcaACGTCAACTTATCTGATCCGTCATCCTGGCTGGACCAGGACATATCCAGTCTGCCGGACTCTGTTTTGGAGTTTGACCTAGAAACATTCGGTCTGGACAGTAACTTGGGTTGGCCATGAATGTATCATAAAAGTCAACCAAAATGTACATGCGTGTTCTTATGACacgtacatttttcaaaaaatgccAGTGGAATTGAAATATAGTTTTAGAGTCAAATAGAAGGTAAACTATTAATTGGCTAAAAGGTTCTTTAAGGGAACAAACaggaaattgtgttttaataagTAGTTTTGCACACAGAGGTCCTAAATAGCAGGTCTATGTGccttaatatgcatttttggtcatattttattataaatagatTGTTTACGTATAGCTACATGAGGTGACGTCTGAGTGGtttagaaaatgtgtattttcacatttcGTAGCATAGAATAACtggtataatataaaaatatatcaaatttgGCTAAGATAAGGCCTAAATGATCTTCTTTAATTCATCAAAATGTCTTGATGGTAAAGCATTATTAACCTTTTACTCTTTAACACTTAGAAACTAATTAAGTATAATTAGTTATGTATAGACGTATAGATTTCATATCTATTTGTTTGCATGTTATAGTATTTTGTTATAGTGCGACTGGggtcatttttatgacttcttGTAACCGATTGTTGACACCTGCCTTTGAATTTCCTCATCATCGTTTTGATGGCGTTTCATCATTCATAGTTATTCataatgcagttttattatattttcatatcgATTTTGCTTTATCACTCTCTGGTAGAGGTCAtgttgtttttcagtatttgtcctcaatgtgaactCAGATATTTTCACAGTATGaatattgaaatacatttacatttctgacAGAATTCCTAAAACACCATCTGTAAATTCCACAAgtattgcaattaaaaagtgGACTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195612 lncRNA upstream 59912 12667293 ~ 12668554 (+) True G132472
TU195568 lncRNA upstream 171264 12556964 ~ 12557202 (+) True G132448
TU195532 lncRNA upstream 227925 12499142 ~ 12500541 (+) True G132421
TU195496 lncRNA upstream 304574 12423656 ~ 12423892 (+) False gngt1
TU195484 lncRNA upstream 339853 12385052 ~ 12388613 (+) True G132379
TU195654 lncRNA downstream 50127 12786644 ~ 12865595 (+) True G132498
XR_006247014.1 lncRNA downstream 95124 12831641 ~ 12834525 (+) True LOC122323456
TU195692 lncRNA downstream 284920 13021437 ~ 13026026 (+) False jtb
TU195721 lncRNA downstream 365432 13101949 ~ 13102925 (+) True G132541
TU195730 lncRNA downstream 382199 13118716 ~ 13123966 (+) False G132547
XM_043217499.1 mRNA upstream 2100 12707267 ~ 12726366 (+) True ago2
XM_043217057.1 mRNA upstream 27855 12698137 ~ 12700611 (+) True dlx6a
XM_043217800.1 mRNA upstream 107446 12569233 ~ 12621020 (+) False LOC122323728
XM_043217292.1 mRNA downstream 3080 12739597 ~ 12761128 (+) True si:ch211-57n23.4
XM_043217726.1 mRNA downstream 57460 12793977 ~ 12829799 (+) True gatad2b
XM_043217727.1 mRNA downstream 68205 12804722 ~ 12829799 (+) False gatad2b
XM_043217501.1 mRNA downstream 105865 12842382 ~ 12862088 (+) True tinagl1
XM_043217692.1 mRNA downstream 206957 12943474 ~ 12952055 (+) True si:ch211-13c6.2
TU195256 other upstream 1204585 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 2799993 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 3089505 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 3189973 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 3564394 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 568489 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 2051027 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 2098120 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 2412787 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 2620223 15356740 ~ 15361845 (+) True anxa14

Expression Profile