RNA id: XM_043218399.1


Basic Information

Item Value
RNA id XM_043218399.1
length 3464
RNA type mRNA
GC content 0.46
exon number 27
gene id abcf1
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8164868 ~ 8174472 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTGTGTGAAGCAGCGAGCGGATAGGCCGCATGTGATGCGAGCTCGCTGAGCTACAGTGTGCTCGTGTGTATTGTCAGCTGCGAAACATCCCCGGGTCTCGTTTAACGCACCGCATTTTTATTCCTCGTGACCGAAAGGGTCTAGCAGAAAGATGCCAAAGAAATCAAAAGAAGTCGCAGAGTGGGAGGGTGACGATGAACCACAGACAGaCAAACATATCAAGAAAGGAAAGAAGGATAAGAGGGGGAAGAAGAGTTTTTTTGAGGAGCTGGCATCAGACACTAAACAAGAAAAAGTAGAGCCGCCACCAGTCAAAGAGGCACAAGGAAAACAGcctcagaagaaaaagaaagacagacggAAAGGGAAACCAGGAGAcgatgaggatgaggaggatgatgcAGAGGTCATGGAGCGCCTCAAGAAACTCTCAGTCCAGCCcagtgatgaagatgaagaggaagaggtggTTGCTCCGGTCaaaggaggaaagaaaaacaaaGGCGGCAACATATTTGCTGCGCTGAGTCAGGGGCGAAGTGATGACGATGAAGAGGACGCAGGTGATGAAGACGAGGTTGATGAGAAACCCCAAAGCAAGAAGAGCTCGAAGGAAGTTGAGAAGGTAACCAAGGGCAAGAAAAAAGATAAGGCTAAACCTAAGATAATAAAGGAGGCCTCAGAGGATGAAAAAGATGAAGAGATGGAGAAGAAAGATGAGAATGAAAAGAAAGGAGGGAAAAAGAGCAAGAAAGCCACCGCTAAACCGTCTAAGGAGGAGGACGAAGTTGAAGAGAAGGAACAAGAGATGTCTCAGAAGAAAGGCAAGAAGGAACAGCCTAAGAAAGGGAAGCCTGATCGCCCTCCTGCTagtgatgaggatgatgaagaggaggaggaaaagagTGACGAAAATGACACAATGAAGAGTGCTGAGGATTCCATCGCAGCTGAGCAGGCCAAAGAGAAACAAGAGGAAGACCGATTCGCTAACTTGActaaaaaagagaagaagaagcaAAAGAAAAGGGACGAGTATGAGCGGCAGGTGGCTAGCGTCCGAGCTCAGAACGCTATAGAGGGAGACTTCTCCGTCTCTCAGGCGGAGCTGTCCTCTCGACAGGCCATGCTGGAAAACGCTTCCGACATCAAGTTGGAAAGATTCAGCATTTCGGCTCATGGTAAAGAGCTGTTTGTCAATGCAGACCTCCTGATTGTTGCTGGGAGACGATACGGTCTGGTTGGACCAAATGGGAAAGGGAAAACCACTCTTCTAAAGCACATTGCCAACAGAGCTCTAAGCATTCCTCCCAATATTGATGTGCTGCTTTGTGAGCAAGAGGTGGTGGCGGACGACACTCCTGCAGTTCAGGCGGTGCTGAAGGCAGACACGCGCAGACTGAAACTCCTGGAGGAGGAACGGCAGCTACAGAGTCGGCTGGAGAAAGGAGACGACAGTGTGTCTGAGAGACTCGACAAGGTTTACGAGGAGCTGAGGGCCATTGGAGCAGCGGCGGCAGAGGCTAAAGCTCGTAGGATCTTGGCTGGTCTGTCTTTCACTCCAGAGATGCAGAACAGACCTACTAAGAAGTTCTCTGGTGGTTGGAGGATGAGAGTGTCCCTGGCTAGAGCTCTGTTCATGGAGCCCACTCTGCTGATGTTGGATGAGCCCACAAACCACTTGGACCTTAACGCTGTCATCTGGCTTAACAACTACTTGCAGAGCTGGAAGAAAACCCTTCTAATTGTGTCCCACGACCAGAGTTTCTTAGATGACGTCTGTACAGATATCATTCACCTGGACAACCAGAAACTCTACTACTACAGGGGCAACTACCTGACGTTTAAGAAGATGTAcatacagaaacagaaagagcttCTAAAGCAGTATGAAAAGCAAGAGAAAAAGCTCAAAGACCTGAAGGCTGGAGGAAAGTCCACCAAACAAGCTGAGAAACAGACAAAAGAGGCCCTGACAAGGAAACAGCAGAAGGGGAAGAAGAACCGCCAGGAGGAGGAGAGCCATGAGGCCACTGAGCTCCTCAAGAGGCCGAGGGAATATACGGTCAAATTCACCTTCCCTGACCCTCCTCCGCTCTCACCGCCGATTCTCGGCCTGCACAGTGTTGACTTTGGTTATGAAAGCCAGAAGCCTCTGTTCAAAAATGTGGACTTTGGTATAGACATGGAGTCCAGAATATGTATTGTTGGGCCCAATGGAGTTGGAAAAAGTACACTGCTCCTGCTTTTGACTGGAAAATTAAATCCTacaaaAGGAGAGATGAGGAAGAACCATCGTTTGAAAGTAGGTTTCTTCAACCAGCAGTATGCTGATCAGCTGAACATGGAGGAATCTCCCACAGAGTACCTCCAGAGGAACTTCAACCTCCAATACCAGGACGCCAGGAAGTGCCTGGGTCGCTTTGGCTTAGAGAGCCACGCGCACACCATCCAGATTTCCAAACTGTCTGgtGGTCAAAAAGCAAGGGTGGTGTTTGCTGAACTTGCTTGTCGGCAACCTGATGTCCTCATCTTGGATGAGCCCACTAATAACTTGGACATTGAGTCGATTGATGCACTGTCAGAAGCCATCAATGAATACAAAGGAGCTGTGATAATTGTGAGCCACGATGCCAGGCTCATCACGGAGACACAGTGCCAGCTGTGGGTGGTTGAGGACCAGTCGATCAACCAGATTGATGGAGACTTTGAAGACTACAAGAGAGAAGTGCTAGAGGCTCTTGGAGAAACTCTGGTCAACAAGCCTAAAGAATGAAAAGCGGCTGGTGTTAATGACAAGAGTGTCAAACTACATCACTGAAGGGCTTTTTGTCGCATTTAAGTTGCAAACTTTTTAAAGCCTCAAtactaaatgcatttctttgttaAATTGACCGATTATGCTAAGCACCTGCATGCAAACTGTGTAGGGTGATACACATAAACGCTGTAATACCTAAATGGGTTTTTCAggtcttttacttttaaaaatgggTAAAGACCTATTTCAGATCAGTATTTTCACTTGCTGACAATTTATACATATAGCTCTTGTTCTTTAGTCATGATGTCTGACATTCTTGTATTATGCTTACTTTCAGGCCATATCATTACCAGCTCTGTTCATCCATGCGATGCAGTGCTATAAAATAAGCCGTGTCACTATCAAATGTGAACAGATGGGGCTAGAATTGTGCAGTTTGATAATGGTGTCTGATAGCTGACGCATACACTTAGTATTAAACTGCCTTTGTAGAACGCGACTATAACGAACTGAACCCCAGTGCTCAATCTAAACCAGCTCCAAATAGTTTAACCTATATACACGTTCGAACAGTGATGCTTCCTTTTAGCTAATCTGTCttgaatgaagaaataaacttgACTAACTTGAACTGAAGAAAGTGTATGCATCCAAATATCATCAcgggaaaaacaaataaaaaaattttttgcaaCAAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K06184 ABCF1; ATP-binding cassette, subfamily F, member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246989.1 lncRNA downstream 20673 8142931 ~ 8144195 (-) True LOC122323284
XR_006247118.1 lncRNA downstream 80972 8078100 ~ 8083896 (-) True LOC122324233
XR_006247114.1 lncRNA downstream 117989 8046276 ~ 8046879 (-) True LOC122324217
XR_006247019.1 lncRNA downstream 167611 7996087 ~ 7997257 (-) True LOC122323519
TU194151 lncRNA upstream 911 8175383 ~ 8176840 (-) True G131464
TU194202 lncRNA upstream 50347 8224819 ~ 8272803 (-) True G131495
TU194216 lncRNA upstream 74349 8248821 ~ 8249227 (-) True G131501
TU194221 lncRNA upstream 105522 8279994 ~ 8280260 (-) True G131506
TU194222 lncRNA upstream 108129 8282601 ~ 8282824 (-) True G131507
XM_043218401.1 mRNA downstream 2705 8150959 ~ 8162163 (-) False ppp1r10
XM_043218402.1 mRNA downstream 2705 8150959 ~ 8162163 (-) True ppp1r10
XM_043217224.1 mRNA downstream 17383 8145636 ~ 8147485 (-) True agr2
XM_043217747.1 mRNA downstream 35610 8122545 ~ 8129258 (-) False khdrbs1b
XM_043218134.1 mRNA downstream 363147 7786886 ~ 7801721 (-) True kpna6
XM_043217579.1 mRNA upstream 7548 8182020 ~ 8195819 (-) False bag6l
XM_043217582.1 mRNA upstream 7548 8182020 ~ 8195781 (-) False bag6l
XM_043217583.1 mRNA upstream 7548 8182020 ~ 8195780 (-) False bag6l
XM_043217581.1 mRNA upstream 7548 8182020 ~ 8195780 (-) False bag6l
XM_043217580.1 mRNA upstream 7548 8182020 ~ 8195456 (-) True bag6l
XR_006247052.1 other downstream 35598 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 35610 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 559725 7602133 ~ 7605143 (-) True G131373
TU193918 other downstream 766922 7395180 ~ 7397946 (-) True LOC122324169
TU193894 other downstream 804757 7356621 ~ 7360111 (-) True LOC122323893
TU194205 other upstream 112822 8287294 ~ 8320885 (-) False trit1
XR_006247071.1 other upstream 115116 8289588 ~ 8320901 (-) False trit1
XR_006247069.1 other upstream 552787 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 576897 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 1134248 9308720 ~ 9309352 (-) True G131861

Expression Profile