RNA id: XM_043218402.1


Basic Information

Item Value
RNA id XM_043218402.1
length 5614
RNA type mRNA
GC content 0.49
exon number 18
gene id ppp1r10
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8150959 ~ 8162163 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTGAGTCGGTCTCAGTGAAGATCTGGCGTCGAGGATTTTTCAACTGTGTGCGAAGACCAAAGCcccaaaaactcatttttttcTGCTCGAGTAACGGACATTCGCTTACTACTTTTTTGCTCCAGATTGTTCAAGAAGGAAAAGCTCAATTTCAGCCACCACAATCCCGCCCATTATGCCATTTTTCAGCCAATAATGCTAAAGTCATGACAGTTTACGTTCtcttaaactgttaaaaagctgaaaattgtTGCTGTTAAGCACAATATATTAATAGCAACCCGAGACGCAGAGGAGAGGTATTAATAGTAAGTGTTCTTTCAAACCAATTTGAATCGAAACTCCGTAACAGTTAACCAGTTGTCTTTGTTGAAAATGATTCCAGATATAAATAGAGATTAAAATTCATAGCTGTATCGAGCGTGGCGACCTAAATGCGCCACAGTTTCTAGAAGCAGGCAGCATGCTGAGATAAAGCGAGGCAGAGCTAGCTAGTGTATGAGCTCACACCGCAAAGCCAGAGCAGCGGCTTCAACGCCCTGCTTCTCTTTGTGTGTGAGACGGAGTAATCCTAATGATTATTAAAGTAACGATAAACCATCGAATAATAAGCTAGCCATCGCTGATCATAAGCAATCTGTACATAAAGATTGCCATAGGCAGAGCCAGGAAGTGACTGCATTCAATTGGGGCTTTTTATAAACTGCATTCTTTTCAGAGGAGAGCTCACTGGAACAACCAACGCAATCTGCACATAAAGATTGCCGAGTGGCGCCTGTGGATTTAGCCGAACGGAGAGAGACAAAGCAGactgaaatgcaacattttgcTCAATAATGTCGTTAGCCGTTATTAGTCGGCGGAACCGGATACCCGTTGAGCTAGTTTTGGTGAAATAAACCTCCCTAGGCAATGATAActtataaaaatgcatagcaGTCTGACTATAAAGATTGCATTTTTGTGTCGTGTGCTTAACGAGTGCGTACGTTAGACAGGGTATTATTTGTCTTGTcgattttgctttaaaatggcGGACGGGTTGTCCTTTTGCTCGGATCACTCGAGGCAATGGTGGCTTTGTTTTTCTGGCTGGATCTACGGGAAACGCTGTAGTTCGGAATGGCTGTCTCGCGTCGCCACCATCCCCAAATACAGCTCGAGGTGTCGTCTTAATATCCGTGAGTCGCCAGCGGGGTAAATATAGTAGGACTTTGCAAGCGGGCGAGACGAATAGCAGGCGGGGGGACGCAGccgttgtgtttttaaaaacttgttGGGATTCAAAGATGGCGACCAGACAGACACCCGTTCGCGAAGACAAGCGGTTAAAGATAGTGGGCGTGGCTCACCCCCCGACTTCAGCCAACCAGAGGAGCCGCTGTCAGCTCGGGGCGAGCTGCTATATGAGAGAGGGAGACTTCGACAGATGGCGAATCAAATCCCCGTGCGGCCGCTGTTGAGCAGAGGCGTAAATTTCATATTGCTGGCCTTTAGTCAGAGCCACACTGGATGCGTTGTGTTGACGAGTTCTAACACAAAACCATCGTGGCACTTGCGCAAAGATGCCAGCTGTTTATGTTACACTCgattaaaaagtgaaagtagGTTCCATCGACTGTAGCGTTGCAGTCTTGCACAGGGCATGGTgtaatgtgacttttttttttttttttttttttttttgaagttaaaatgtgtttctcccACCAGAAACCTGACAGATACGATGTTAATCTTTTCTCTCCAGTGCATGCACGATCTTGTTGACTTTTCCCTGTTTGTTATGACAACTGTGTGACGTTTCCAGGAGTTGTGTGTATTGTTCCGTGTTTAAGGAGTTCGGTTGTGACTATAAAAAGTTCTTCGACTACAGTGTTACGGTAAGCAGCTATGGCCGTGGGCCCGGTGGACCCCAGAGAGGTGCTAAAAGGAGTTGAAGCTCTGCTGGGGAAGGATGGAGAGCTACGAAGCCTTGAGGGAGTTGCTAAAGTCTTCAGTCTCATGAAGGCCTCACATAAAATGGTCAGCAGATGCATGTATCTAAACATCTTACTGCAGACAAAATCACACGATGTACTTAATCGATTTATTCGAGTTGGAGGCTACAAGTTGTTGAACTCTTGGCTCACCTACTCAAAGACCACCACTAACACCCCTCTGCTGCAGCTCATACTGCTCACCCTTCAGAAACTCCCCCTGACTGTGGACCACCTCAAACAGAACAACACAGCCAAGCTGGTGAAACATCTGAGTAAGAGCGGCGAGACTGAAGagCTGAGAAAGCTGGCGTCAGTGCTGGTGGACGGCTGGATGGCTATTATCCGCTCTCAGAGTGTCTCCAGTGGAGCCTCACCCAATGACAAGAAACGAAAAAAAGAAGATGGAAAAGTGCGCCCAGAGGTGAAACCCAGAGAAAAAGGAGCagaagaggagaagaagaaagacaaacCAAAAGCTTATGCTCCAAGTCACGCAAAGATCCGCTCCACAGGTTTGGAGGTGGAGAGTCCAGCTCCAGTTCTTGTAAAAAGGCCCCCTATTGCACCCCAACTCGGAGATAAATACAACATCAAGCCAGCTGTTCTCAAAAGGCCAAGCACATCGCCGACCGATGCACCACCAGTGGAGAAGAAGTACAAGCCCCTTAACACCACCCCCAACTCTGCCAAAGAGATCAAAGTCAAACTTATACCCCCACAGCCGATGGAAGGCACTGGATTTCTGGATGCCCTCAACTCGGCTCCAGTGCCTGGCATTAAGATCaagaaaaagaaaccaaaagcAGCTTCCCCTACCACTAACAAGCCCTGTCCGTTTGACAGCAGGCCTCAGTCATACTCGGGCGCGCAGGCCAAACCGTCTTCCCCCGAGGCGCCCTCATCTCAGACACCTCCTCATGAGAATCAAGAACTGGAGCAGCCCGGCACACCCGTGCCCACCGAGGACCCTGATGCAATGGAAACCGGTGACAAACCCAATGCTCTGTCTGAACCTCGCGGTGAGGAGGAGAGTCTGActaagaaaggaaagaaaaagaagagcgTTCGGTGGGCGGAAGAGGACCATCTCAAAGAGTACTTCTACTTTGACCTGGATGAGACTGAAAGAGtGAACGTTAATAAAATTAAGGACTTCGGTGAGGCAGCCAAACGAGAGCTGATGATGGACAGGCAGACGTTTGAAATGGCTCGTCGTCTTTCTCACGACACCATGGAGGAGAGGGTGCCCTGGACTCCTCCGCGACCTCTGACCCTCGTAGGCAGCCTGGTCATTCCTGGTTCCAGCAGCAGAGAGAAGATGATCCAGAGAGACCGAGAGATGGGCATTCTGCAGGAGATCTTCCTCAGCAAAGAGAGTGTTCCAGACACTCCTCATGAGCCAGACCCTGAGCCGTATGAGCCCATGCCTCCTCGTCTCATCCCACTGGATGAGGACTGCAGTACAGAGGAGAATTACATCGAGCCCACTGACGCTGCTGCCTCTGGCGGCTCTTCAGGCTCTAATGAAGGCTCCAAGCTGCCTCCTGTTCTAGCTAACCTCATGGGAAGTCTGGGCAACAGCGGCCGCAGCCCTCAGGCGCAAGGCAACACCCCACCAGCCAGTAATAACCCTGCTGTTAATGTGCAGGAGCTACTCTCATCTATTATGGGTGCTCAGGGATCTAACCAGTCTCCAGAGGACCTGATCAAACAGCCTGATTTCTCTGATAAGATCAAGCAGCTTTTGGGCTCCCTGCAACAAAACCAGAACCAGAATCAAAACCAACCTGCCAATGCTCCACCAATGAACACGGGTCTGCTTGGCCATGGCCCCGGCATGAACATGAACAACATGAACAACATGCCGATGCCAATGAACGGCGGTTTCCCTCCGAACAAGCCCCCTGGACCACATTTCAACCATCCCCTTCCCCCCCACGGCCACGGCCCTCCCTTCAATGCCGGTGGCCCACGCATGATGGGCCCTCCGCCCGGGCCACAGGGCCGCGGGGCCGACAACGGCAACTACTGGGGCGACGACTCCATGAGAGGAGGCCCACACCGAGGAGGACACTTCCACCGGGGGAGAGGGCGAGGAGGAGACCCGGGCTTCAGAGGACGAGGGGGGCGAGGAGGACCGCGTGGGGGACACAACAACATGGGTGACATGTCAAAGAGGCCGGTGTGCCGCCACTTCATGATGAAGGGAAACTGTCGGTATGAAAATAACTGTGCGTTTTACCACCCCGGGGTAAACGGGCCGCCCCTTCCTCCTCAGCACGGACACTAACTCGCCTGCAAGCTGCCGTTCCTCGAAGCCACCACTAGTGGGCAACAGGACTCGAAGCGAGCCTCATGCACAGAAACTGAAACAGGACGTTTGCGTCTGTGACGGCACAGTCCCGCCTGCTTCGGTCGAACAGTTGCTTCATCGGATCTGAACGTTGTCTCGTGTCTTCTCCGTTTTACTCTTCTCTGGAACGCTGTGAGAAGAGCTGAGATGCTTCGTGAAGAGCCGGACCACTAGACTTTGCGGCCTACGTGTAAATAGTGATTCCTGAAcgtgtatatttttattgtgattcTGTGTACCACTGACCTGACTGCTAAAGATTGTACTACGTAACTCTTGAGTGTAACCACTAGGACGCGGTGTAAATAATAGTCTTCGGCCAGCGGCGTACGGTTCCCTTAAGCTTCTCCTGGTGGCCAGAACCCCAGATACCGGATGTGCGGTTGTCTGAATTATAATCGGCACGCCGGGTATTCCTTGCATAATCAGATCAACACTTTGAAACGTTACTACTACAGCAcagaactttttattttaagattttctgGTTGAATTCAGACCCTCTTGCCGTActgttgtgatgttttattttcaggtttctATTGAAGAGGGAGAAACCGCGCTTCTATGAAATGCGTAGAAGCTTTCAAGTTTCCACATTTATCCGGCACGAAAAGTGCCTCACGCATGGTCCTGGATTAATTCagtacactttttttcaaaacctaatcATTTGCACTGAAATGCATTCACGAATTGGCATTGTGTTCACTTTTGGCCCCCCATTTTTGGATACGCCGTGTACTCGAGGGGTTAATGCTATTCAGAACCGCCACCTTTTGCATTTTCGAAGTCCCGCTGAATACTTGAATCGATACTTTGTGATGGAGAGTGATCCTAGCCTGCTAAAGAGAAATCCGCTGTGGTTCTGTGTAGTGTGACAATCAGGAGAATCGGTGTTGATGCTATGGCTTGATTTGCTGTGCGTTCATGTTCTCGGACTCGTGTGGGTCTTTTCTGCTCTATCAGTGTTCAACTGAGCCGAACCCGGCTACAAACCACTATCACCAGGGCCAAACGTATTCAGGTGTTTTCTGTGAAAACCGTGGCCATTGTCTCTTGTGGGACTcgatttgttttttcctttcttttttttttttcttttgattcaCTATTTTcccatgattttattttgatacaagtctgataaaatttttttttctatcgtTGTTGGAGAGATGTCTATGTGTCAGAGTTCtgcataaacacaataaaaggcacattcagaaatgtaaagtgtttttctacatgtaaattaataaacgTTACAAAATTCA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K17552 PPP1R10; protein phosphatase 1 regulatory subunit 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246989.1 lncRNA downstream 6764 8142931 ~ 8144195 (-) True LOC122323284
XR_006247118.1 lncRNA downstream 67063 8078100 ~ 8083896 (-) True LOC122324233
XR_006247114.1 lncRNA downstream 104080 8046276 ~ 8046879 (-) True LOC122324217
XR_006247019.1 lncRNA downstream 153702 7996087 ~ 7997257 (-) True LOC122323519
TU194151 lncRNA upstream 13220 8175383 ~ 8176840 (-) True G131464
TU194202 lncRNA upstream 62656 8224819 ~ 8272803 (-) True G131495
TU194216 lncRNA upstream 86658 8248821 ~ 8249227 (-) True G131501
TU194221 lncRNA upstream 117831 8279994 ~ 8280260 (-) True G131506
TU194222 lncRNA upstream 120438 8282601 ~ 8282824 (-) True G131507
XM_043217224.1 mRNA downstream 3474 8145636 ~ 8147485 (-) True agr2
XM_043217747.1 mRNA downstream 21701 8122545 ~ 8129258 (-) False khdrbs1b
XM_043218134.1 mRNA downstream 349238 7786886 ~ 7801721 (-) True kpna6
XM_043218018.1 mRNA downstream 366765 7777473 ~ 7784194 (-) True txlna
XM_043218400.1 mRNA upstream 2705 8164868 ~ 8174472 (-) False abcf1
XM_043218399.1 mRNA upstream 2705 8164868 ~ 8174472 (-) True abcf1
XM_043217579.1 mRNA upstream 19857 8182020 ~ 8195819 (-) False bag6l
XM_043217582.1 mRNA upstream 19857 8182020 ~ 8195781 (-) False bag6l
XM_043217583.1 mRNA upstream 19857 8182020 ~ 8195780 (-) False bag6l
XR_006247052.1 other downstream 21689 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 21701 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 545816 7602133 ~ 7605143 (-) True G131373
TU193918 other downstream 753013 7395180 ~ 7397946 (-) True LOC122324169
TU193894 other downstream 790848 7356621 ~ 7360111 (-) True LOC122323893
TU194205 other upstream 125131 8287294 ~ 8320885 (-) False trit1
XR_006247071.1 other upstream 127425 8289588 ~ 8320901 (-) False trit1
XR_006247069.1 other upstream 565096 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 589206 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 1146557 9308720 ~ 9309352 (-) True G131861

Expression Profile