RNA id: XM_043218416.1


Basic Information

Item Value
RNA id XM_043218416.1
length 4918
RNA type mRNA
GC content 0.39
exon number 15
gene id LOC122324173
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17095534 ~ 17104511 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTACCGCTGATGGCAGCACCTCATATGAACCTCTCTGTCGACCGTGTTGACAGAAATACAACAAAGAGACGAGCTGCTTGTAGCGACATGATACATACCACGTTGATTACCAATTTATATCACGCATATGGCAACATAGGATACTGATATAAGTAAGTTAAAGGGGAGTATTTAAATAAGCTCTGACCCCATTATCACATCGGCGTTAGAGGTGTGTGTGGCACAGCCGTGGGCACAACTAGATGTCAACACAGAGGAAGGGATAAACACAAGATTTCCACCtaactttattatttacacaaCTGACTTGTATTCAGCCCAATCAGACATTTAAACTGTAGTCACCGCAAAGTGTTTTCTTGTCTGTTAATTTGCTGATGTGCTGGAGTGAATCCTACCTACCAgataaattgataaattaatCGAATGATCTCAGGATTCAGGACATTTAAGAAAGTTCTTGTCTAGATATTTCCGTATTTCACATTGCCTTCGCAGACTAGTTCTTTATTACACCCTTTCAGGTATAATTTTCTATAATGTGTGCAGGTTTgcaatatttatacacacaaatatttatttctcttcttttagAAGAGACCTTGTAAATATATCTTGTGTGGCAGCATTGCTCTTAGTTATAGAGCCTAAGCTGTATGTAGAATTTGTAAATATCTCATAAGATTCTTTAGTGAAACTTTTTATTGAGACCTTGTGGACACTGTGAATGGTTTACTAGGTCTTATCAGACCTTAGGAAGGCATTTAGAGAAGTGAAAAAGCTTAAGAAATGGCGACAAAGATGGAGAACACTGGTCCAGGTGTTATGGGATTTAACACACACAACAGGCAGCTTATTGGACAGCCTAAAGCCCCCTCTCAGTTAGGACCCCAAACTGTGAGTGCTCAGCTTGGAAAAGAGCCCATGGGGACCCAGAAACCAGCCAATGTAACTCAGGAAGGACCTGGTATCAGGTTTGGTGACGACTGGAAAAAAAGCCTACAGCTCCCCGCTAAGGACAATAGAGTCAAAACGTCTGATGTGACTGCAACCAAAGGGAATGAGTTTGAGGACTACTGTCTTAAAAGAGAGCTGCTGATGGGCATTTTTGAGATGGGCTGGGAAAAACCCTCCCCCATTCAGgaggAGAGTATTCCTATTGCCCTTTCTGGCCGCGATATATTGGCTCGTGCTAAAAACGGGACCGGAAAGAGTGGAGCATACCTGATCCCCCTTCTGGAGAGAATTGACATAAAAAAGGATCATATCCAAGCCCTTGTGGTAGTTCCCACTCGTGAACTGGCTCTGCAGGTCAGTCAGATCAGCATTCAGATCAGCAAGCACTTGGGTGGCGTCAAGGTCATGGCAACCACTGGTGGGACCAACCTCCGAGATGATATCATGCGCCTGGATGAGGAGGttcatGTTGTTATAGCAACACCTGGAAGAATTCTGGACCTGATAAAAAAGGGCATAGCCAAAGTGGATAAAGTTCAGATGATGGTTATGGATGAAGCTGATAAGCTGCTCTCTCAGGACTTTGTAGTTATTATTGAGGACATCATTGGTTTCCTTGCAAAGAACCGACAGATTCTGCTCTATTCAGCCACATTCCCAATCAGCGTACAGAAGTTCATGGCAAAGCACCTGCAGAAGCCCTATGAGATTAATCTGATGGAGGAACTGACCCTAAAAGGCATCACGCAATACTATGCTTATgtcacagaaagacagaaagtcCACTGCCTTAACACGCTGTTCTCCAGGCTGCAGATAAATCAGTCTATTATATTTTGCAACTCTACTCAGCGAGTGGAGCTTTTGGCCAAGAAGATCACGCAGCTGGGATACTCCTGCTTCTACATTCATGCAAAGATGATGCAGGAATACAGAAACCGTGTTTTCCACGACTTCAGAAACGGGCTCTGCAGGAACCTTGTTTGCACAGATTTATTCACTAGAGGCATCGATATCCAGGCAGTAAATGTGGTCATCAACTTTGACTTTCCCAAGAATGCGGAAACATACCTGCATCGCATTGGACGCTCAGGAAGGTTTGGACATCTGGGTTTGGCGATCAATCTCATTACGGCTGAGGATCGCTTTAACCTGAAGACCATTGAGGACCAGCTGATGACGGACATAAAGCCCATTCCTGGCAGCATTGATAAGAGCCTCTATGTGGCAGAGTTTCACTCTTTGAACCCTGACTGTGAGGCAGAGGCTCCTCAGCCCGGCGAAGACTCTGAAGTCCAATAGGAAGCACCATTAGAGAGCAGGACAGTTGGAGAAACTGAACCAGACTTTTGCATCTGCTTTTGCACAAACCAGTAACTTCTCTGCTCATAAGTTTCCTCACCTTTTCCACCTCCACAGTATTTTTCGTTTTCAGTTGCTGTCAATGTTTTGCTCTTTTGGGGGGAGGGGTTATAACTGaccatatacatataaatgacCATACACATTCCAGTTGAAACGtacaagaataaaaacaaaacattcagacAAAAGTTCTTGTTTGATAGAAAACAATAAACTAAGGTAATGGTGAAAATAGAGCTTAGCATACTTGCATCATTGGTTGAGAATTTACATGCAAAACCTGTTGAACCTAAGtgccttaaaaatatattattattatattatagtctCTGTCTTAGATTAACATCGTTACTATGTTAAAGTATTCCCAAAGACTAAACACAGGATTTACTGGATTCTGTGAAGGAATGAGGAGAAGCATATTCAAATTCTCTTCATATTCAGACTGAGGCAGCTAGAGAAACCAGCATCTATAGATATATTGCAGAGCTCAGGATTCAGGTGTCAACATGAACCATTGCACTAAACTgcctgagggaaaaaaaaaactgcattaaaattggtgctttttttgtagtttcatTAGTCATGGACAAATGTAAATTTGGAATTCATAAAGAAATATAGATGTAAATTATGGTTTCAAGCAGAGACTAAATTGGCGGGGGTATTTTTTGTGATTAGATGTATAGAGTAGTCAACATTGGAAGTgggtcaaaaaaaaagttatccaCTTCAATAGTTGaatcgtcttttttttttttttttttttttttttttttaagctatattacattaaacattagtAACTTTTTAACAGGCATGCCAAAACTTGCATAATGTGAAAGATGTCAGACTACTACATGAAAGCAGATTCAAAATATTCACCACAATGCAGTGATTTATACATTAACAtagttatacatttaaatgtgagGATCTGGTAAAGGATTtgtcaagatgttttttttttttttttttttttttttttaaatagcatctttcacagttttcatttattttgaaatgaatgtatAAAGTTGGTAATGAACAGACTTATTACATTATTTCCAGATATGTGGtataaatgtttagaaataaaaattggaTTGTGTCCTatgtgtgacagcaaaaatgtaaaaatatattgtcattcttagttacaaatagcatgaaggaggtttatcttcaatgttagttttttttgtggggGGTTTCTACATTTTTCTGTCATATCATAGGACACTGAATTTTCAACTAcccatgcatgtgtatgtataggaggcaaaatgttctttttattccCTTTTGGATGTTTGCAACCTCATGTTGCATCTGAGATATTTTCATTAAGAAAGTATTTTCATACAGCAGAATTGTAGCATCTTCTCGGTggcagctgttttttttttttttttttttttcctcctaaagatgttcttcaaaatatttttttcctcgcTATGCAGGCATATGTGGCATGTAGCCCAAAGCTTTAGAGTAGAAACCTCAGTTTGCATGAGGCACAGTTCAGggctgcgtttcccaaaagcattgttgGCTTAAGTGCATCGTAGACCCACTGAAAACAATGGAGTCACGACCATCTTAGGCTTAcagtgcttttgggaaacgcagccCAGGCCAATACGCACTGTGCAGACCAGGGCTGTCAAACTCCGTTCaggccctgcagagtttagatcgGTGGATCTCTATTTCAGTCCAGGGGACTCCTGCTCTGCACTTTTTGCATCTCTCTTTTATGTAACACCCCTGAATgagatcatcagctcattagtttAGTTCATGGAGCTCTCTCCTAACTTGCTGTTGATCtcaatcaggtgtgtttaaataGCAGGGGATCCCCAGGACTAGATCGAGAGCTACtggtttagatgcaaccctaattatttaaaagctaGATGGTATGCGTGTCGTAGCAGGGTTGGAACTAAACTCTACAGGGCTGTAGCCTTCCGGGAGTTGAGTTTGACACAATTTCTGCTGATGATCCTGTGCTACTCGAGATTTTTGTTTGTCTAAGACTCAGCATACTTCAAAATCGTATTTTACTGGAAAAACGTTAATAATTCTTCATCCATTCTGTCATGCAGtgatggtgatttttttttttttttttttttctcctcctttaGCTTTCATGTGGTTTATAAACAGAGGAGCAGATGTTATGGGGACAattgtttaatgtaaattttgtaTAGGATTcttggagagagaaaaaaatgtgatgtgTGAAAcccttttttgtaatttacgCAAGAATGGTTTAATGCTCATGTTTAATGTTAGTGATTTATGTTTTCATCtctattgtttatttcatttgaatagcTCAAGGTTATGTAGTGTAGCTTGAAATAGAATGGATGTGCCATTTGTCCCAAACTTCAATACATTCATATGAGAGTGAACAGAAGGGTTTTTCTTTGTGAATGTGGAAAATCTATATCAGGggatgttttttggtttttataattttttttgttttttaaagtgaggagaaacagcatttaaattGGTTAACTGTTTCTTGTTGAATTGGCTGTAATAAATTGTTGTCAATCCA

Function

GO: NA

KEGG:

id description
K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197750 lncRNA downstream 38667 17056425 ~ 17056867 (-) True G133887
TU197749 lncRNA downstream 39223 17056101 ~ 17056311 (-) True G133886
TU197725 lncRNA downstream 53741 16974031 ~ 17041793 (-) True G133865
TU197719 lncRNA upstream 23157 17127666 ~ 17131995 (-) True G133861
TU197773 lncRNA upstream 59323 17163832 ~ 17164115 (-) True G133902
XR_006246988.1 lncRNA upstream 60185 17164694 ~ 17167102 (-) False LOC122323277
TU197774 lncRNA upstream 62516 17167025 ~ 17168108 (-) True LOC122323277
TU197779 lncRNA upstream 110186 17214695 ~ 17215112 (-) False LOC122323474
XM_043218461.1 mRNA downstream 1029 17090619 ~ 17094505 (-) True tomm40l
XM_043218462.1 mRNA downstream 6784 17087423 ~ 17088750 (-) True apoa4a
XM_043217746.1 mRNA downstream 9618 17083910 ~ 17085916 (-) True apoea
XM_043217744.1 mRNA downstream 11993 17072331 ~ 17083541 (-) False si:ch73-347e22.4
XM_043217731.1 mRNA upstream 431 17104940 ~ 17125195 (-) False lipea
XM_043217730.1 mRNA upstream 431 17104940 ~ 17120557 (-) True lipea
XM_043217733.1 mRNA upstream 37318 17141827 ~ 17159268 (-) False ago3b
XM_043217732.1 mRNA upstream 37318 17141827 ~ 17159268 (-) True ago3b
XM_043217994.1 mRNA upstream 74360 17178869 ~ 17184117 (-) True si:dkey-211g8.8
unassigned_transcript_2205 other downstream 194758 16900705 ~ 16900776 (-) True trnap-ugg_15
unassigned_transcript_2203 other downstream 196933 16897995 ~ 16898601 (-) True LOC122324115
unassigned_transcript_2202 other downstream 198391 16896108 ~ 16897143 (-) True LOC122324113
unassigned_transcript_2200 other downstream 202953 16891692 ~ 16892581 (-) True LOC122324112
TU197682 other downstream 204668 16890153 ~ 16890866 (-) False LOC122324114
TU197783 other upstream 113279 17217788 ~ 17218749 (-) False LOC122323474
TU197841 other upstream 178823 17283332 ~ 17284744 (-) True G133949
TU197840 other upstream 226188 17330697 ~ 17334234 (-) True G133948
TU198224 other upstream 508971 17613480 ~ 17616238 (-) False LOC122324164
TU198368 other upstream 825180 17929689 ~ 17935436 (-) True s100a10a

Expression Profile