RNA id: XM_043218445.1


Basic Information

Item Value
RNA id XM_043218445.1
length 2365
RNA type mRNA
GC content 0.48
exon number 5
gene id ccn2b
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3617141 ~ 3622533 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCTGCTCTCCACTCCACTACAATCCTGccgtctgacacacacacacacacacacaccaaagaACCAAAACAAACCCGGAGTGTGTGCTTCTGTAGGGAACTCTTGGAAGAAATGGCCGGAACAGCATTCACCAGATCGTGCATCGTCCTCAGCTTGCTCATGCGTATGGCGCTGTGTCAGGACTGCTCTCAGCCCTGTGACTGCCCGGCCGAGGGCCCTTTGTGTCCCGCGGGCACCAGTCTGGTTCTGGACGGCTGCAGCTGCTGTAAAGTGTGCGCCCGACAGGCGGGAGAGCCCTGCTCTTTCCTGGAGCCATGCGACCATCATAAAGACCTGTATTGTGACTACGGAGTGCTGAGCGACACCGAGACAGGCATCTGCATGGCTCAAGAGGGTCAGACGTGTGACCTGGGCGGTGTGATTTACCGCAGTGGCGAGACGTTTCAGCCCAGCTGCAAACACCACTGTGTGTGCATGAACGGGGAGATTGGCTGCGTGCCGACCTGCGCCAGCAGCATACGGCTGCCCTCTCCTGACTGCCCTTATCCGAGACGCGTCCAGATCCCTGGCAAGTGCTGCGAGGAGTGGGTGTGCGACCAGATCCCACAGGAAGACACCTTCCAGTCAGCAATGGCTGGTAGGTCAATCGCGTATAGAGAGCTATCTGGTCAGGATGTCCAGCCCGAGAGCGCGAGGGACAACTGCATCGTTCAGACCACTGACTGGAGCGAATGCTCCGCCACCTGCGGCATGGGGGTGTCCTCTCGTGTCACCAACGACAATGAGCAATGCCAGCTGGAGCGGCAGACCCGCATGTGCATGATCCGCCCCTGCGATGCGGAGCTGGAAAAGGACATCAAGAGAGGGAAGAAGTGTGTGCGGACCCCAAAGAGTCAGCGCGGGATGCGTTTTGAACTGTCGGGATGCCAGAGCATCAGGCCGTACAAGCCCAAGTTCTGCGGGGTGTGTACGGACGGCCGCTGCTGCACCCCTCACTCCACCGTCACGGCCGAGGTGGAGTTCCTCTGTCCCGAGGGAGACTCCTTCAGGAGGAAGATGATGTTCATTAAGACCTGCTCCTGTCATCACGACTGCCCCCGTGAGAACGATATCTTCCTGGCCTCAAACTCACGGAGAATGACCGGGGACTATGATAACGACATGTGAGGAGCTGTCCGGtgtcacgcacacacacacacgcacacacacacacacacacacacacacacgcacacacacacacgctgacgATCAAGCGCATGCGCACACGAGGCAGCTCCGCGTTTTACTGGACCCTGATTTTCTCACGACTCGTGAGCAGAAAAGAAACGAGAATGTTTGACACGAAGCGAAAACTCCTACTTCtcctgttttgtattttgtgaaGCTCTGAAGTCATCCGGCTGTTTGACCGGTCCTGCCACAGCAGACCTAAAGCACTGAGAACTTGGTTTTAGGaagatagttcactcaaaaatgactcACGTTGTCGCAAACCTATCAACTGTTACGTTGCAGAACACTAAAAGAGTTATGAAGAATTTGGATGCAGCTCTTTTCCATTCCGTCAGTACAGTTCCACACAAGAGTTTCCAGATTTGGAAGCCATGATGTAACTCGTGAAAAGGAGCAGGATAACAATCTGGTCACTATACAATATAATTGTGTAGAAAAAGCTGCATGgcgttgctttaaatgctttaattctACGTTTGTGCCATGGGTTTGGAATAGCGTTGggtttaatttttatgttttttaaatgtattaatttagttatttttgggtaaacttgtCCTTTAAGACGTTGTGGACACGAAGCAACTAATTAAATCGAGTTAATTTCAAGAACGTTTTCCTCAATACAGGAATAGACTGAAAAGACAACGATGTAATCATACACttgatatgtatttttattgtattttttcgTTCGATTTGTCAATCGGGTTATCATTATTTACGATCATTTGTACCTTAAAGCAAGGAATAATATTTAACGGCTGACCTTAATAACTTTGTATCTGATTGAACCCGATCTGTCAAGTATGAAAACCGCTAATGAGTCCCAAAGTATTTGGGGAAGAAAACGAGGCCTAGATAATGAGATACTGCCTATGatgtttactgtttatttaataggAAATGAATCCTCGGAAAGGAACCAAACGATGACGAATACACCTTGTGTAAATACTGTAAGAAGACCGTGTACAGATTGTACTAATTTATGTAGCTcttaaatgtagttttgtttGTGTACTGTATTACTCTGTGTTCATTGTATTCACCTGGCAATGATACCGGCGAGTTCTTTTCTCATGCACTTTTATTTTCcaataaagaaattatatttttatata

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192190 lncRNA upstream 40953 3572274 ~ 3576190 (+) False sh3bgrl3
TU192143 lncRNA upstream 75749 3465239 ~ 3541394 (+) True G130150
TU192360 lncRNA downstream 275528 3898061 ~ 4076098 (+) True G130313
TU192366 lncRNA downstream 307680 3930213 ~ 3935051 (+) True G130315
TU192369 lncRNA downstream 322862 3945395 ~ 3964718 (+) True G130318
TU192394 lncRNA downstream 528144 4150677 ~ 4160027 (+) True G130336
TU192396 lncRNA downstream 553735 4176268 ~ 4199257 (+) True G130338
XM_043218001.1 mRNA upstream 26490 3583094 ~ 3590653 (+) True stx12
XM_043218000.1 mRNA upstream 26490 3583150 ~ 3590653 (+) False stx12
XM_043216957.1 mRNA upstream 34753 3577978 ~ 3582390 (+) True trnau1apa
XM_043216958.1 mRNA upstream 34753 3577978 ~ 3582390 (+) False trnau1apa
XM_043218084.1 mRNA upstream 40950 3572262 ~ 3576193 (+) True sh3bgrl3
XM_043217650.1 mRNA downstream 1242 3623775 ~ 3679373 (+) False epb41a
XM_043217641.1 mRNA downstream 4591 3627124 ~ 3679373 (+) False epb41a
XM_043217651.1 mRNA downstream 8538 3631071 ~ 3679373 (+) True epb41a
XM_043217640.1 mRNA downstream 8538 3631071 ~ 3679373 (+) False epb41a
XM_043217645.1 mRNA downstream 8538 3631071 ~ 3679373 (+) False epb41a
TU192043 other upstream 523429 3093067 ~ 3093714 (+) True G130077
TU191970 other upstream 638727 2970687 ~ 2978416 (+) False phactr4a
TU191942 other upstream 723651 2889689 ~ 2893492 (+) False serinc2
TU191918 other upstream 830795 2785925 ~ 2786348 (+) True G129993
XR_006247126.1 other upstream 1286867 2330141 ~ 2330276 (+) True LOC122324256
TU192216 other downstream 137334 3759867 ~ 3760985 (+) True G130208
TU192476 other downstream 622235 4244768 ~ 4259085 (+) True G130372
XR_006247039.1 other downstream 772052 4394585 ~ 4406579 (+) True ptpn2b
TU192559 other downstream 837382 4459915 ~ 4464904 (+) True znf706
TU192560 other downstream 837382 4459915 ~ 4464590 (+) False znf706

Expression Profile