RNA id: XM_043218467.1


Basic Information

Item Value
RNA id XM_043218467.1
length 4009
RNA type mRNA
GC content 0.38
exon number 4
gene id hpcal4
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8197711 ~ 8215983 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTCCATTCATCCTCCTCATCACAGAGAAGAAACAAATAGGTGGCGTTTCTCTGCTGAAGTACAGTTTACTCCTCCAACCGCGAGAGTACAAGTCACTTTGAGCGATAAATAAAAGACCGGATACTTCGAAATTCGGAGAGGTGTAGAAAGATGGGGAAACACAACAGCAAGCTTGCTCCTGAGGTGCTTGATGACTTGACCAAGAGTACAGAGTTCAACGAAGCTGAGCTGAAGCAATGGTATAAGGGGTTCCTGAAGGACTGTCCATCTGGCATCCTCAATCTGGAAGAGTTCCAGCAACTCTATGTCAAGTTCTTTCCTTATGGCGACGCTTCAAAATTCGCCCAGCATGCCTTTCGGACGTTCGACAAAAACGGTGATGGCACCATTGACTTCAGGGAGTTCATCTGCGCGCTGTCCATCACTTCCAGGGGAAGTTTTGAGCAGAAACTCAACTGGGCCTTCAACATGTACGACCTGGACGGAGATGGCAAGATCACGCGCATGGAGATGCTGGAGATCATCGAGGCAATCTACAAGATGGTTGGGACGGTGATCATGATGCGTATGAACGAAGACGGGCTGACCCCACAACAGCGTGTGGACAAAATCTTCAGCAAGATGGACAAGGACCACAACGACGAGATCACGCTGGAGGAGTTCAAAGAGGCGGCCAAGAGCGACCCCTCCATTGTTCTTTTACTGCAGTGTGACATGCAGAAGTAAGGAaggagaggaggaagatgagTGAAGTGGGCTGGGGGTGTAGGGAGGGGAGGAGAACCATGTACAGACTTCTAGAGAGATGTAGGTAATAGATAATGAGAGGAAATGTACATACAGCTGAACATAAGTTAGAGCGCATGATAATCCTGCGAATGTTAAGGGAAAGATTATGGTGATTTGAAATGATTAGTCAAAGTCATGCAAGAGAGAGTCTTTTCCACCCCGTATCACTTATTACACATTCTGTCTGCTTTCCAGCCTCTAGAGAGAgtcagaaagttcaaaagattgAATCCCTAATACAAGACATTTCTTTGCTCAAAAAGGTCACTTCTGAGCCAACTAACTCCCTTTTAGGATTAGAAGCATATTCGactaatttaatgtaataataatacataatgaaatgaaaattacatttgattctGATCCATTTTTTAATCAAGATTTTTTAAAGATagaatttttttgcagttttgggcatgactttatttttcACTCAGAAGTTGCCAGTACACTTGACAAATAACTACAAAGAAGCGGCAAACAAGACATtgattaaatatacaatttagaaagatttgggggtttttttcactacaaaaaaatctgattatttagtgttccaatttatttattttcttttatttattggtgGATATTGAAATGACCTGGTATTTAAGATACTTAATAGTTCATGCTCATTTCACATTACTTTTCTGTCATCTAACACTCACTTGAAGTTATTACtatctttaaaacacacaaatcattTAACAACACCGTTAAATATAATCGGCAGTAAATTTGTTTGAaattttcatactgtacatttttgtttttaattgtatttcatttattacgacaaaactgcatttttttctattattcatttatctaCAGAAGAGATTACAAGAACACAAGAAAGAGGGCTTCCGGTTATCAGTTATTGCGCATAACAAAAATGATCTGCTTATCTATTGGCCAAATGTttctactattttttaaattatttctctatttgtttatttttcgcCCAGATTGAAAATGTCAGAACAGCAACGTGCCCGGTTACAGGCTGTGCCAGAGTAAGAGCATTACAAGAGTTCAGGGCAGGACTGAATCCTTTGACATTTGTGGGTGCCTTCATATACAGCGCTCTAGCCCACCAGATAACACTGCAGCAAATAATACTGACACATTAGTGGAGTTTGAACGCATTGCCATAATCTGACGATACCATCACGGAGCGTAGTCTAATTGCGTTATTGGCCGAGATAAAACTGAAAAGCCGTGGCTGAGTGAAAGGGTGGTATTTCGTAACGGGTCATGCCAGAAAATGAGGAGTAGCTTTAGCTAGAGAACTGACAATATATGTACATGATGACATTTTGTACATAACGCCTATACACATGCttaatatgtacatgtaaatgtttctcTACCTTAGAACTGCTTTCATAATCTGACACGGCTGCAATGATTTTTGtgctaacacaaaaaaaacccttattGTACTTACGTGTGTGGGTCTGTCTGCGGAAGAGGGAAACTaacgtgtgtgttttcttcactATAATCTGGTGCGAAAGCTGCAGCGTGCGAGTGTGTGAGTTCACGTGAGAGAACACAAATGCCTCAACCTTTGTATTAATTCTTTCTTATGATCTTCACGCCAGTGCTAGGAGTATTACGCCGTCGTGTTTGTTGTTACCTGGTGCGACTGGTgagctgtgtgtttctttttcGGTCATGAGAGCTTTAGTTCTGTCTTTATTAGTTCATCTCTTCTTTCATAAGCTTTGCAGGTGTCACCCAAGGGGATTTTAATTGTATGAATATTGTCAATGTTCAACTACCTTTCTTTATTCTTGTAATATAAGTGGACACAAATGTAAACCAGACGCAGAATGTGTAGTACTTGTTAATGTTACTATGCCGCAATACTTACTAACATGAAATTACTGTTGCACTATGTAGTGAGTAGAGGAAATAGCTTTAGTTTTAGACTGCCTCCCTGTGGTGAAACATGTTAATTCATTTACCCAGTTAACTTAGCACCAGATCCTAGCAAACGCTAGGATTTCACTGAGAACCAGGGCTGTCGGGGGTCCAGCTGAGTTCCCCACCTGATATAGTTTGTGTGAATTTTAACAGCAACCCTCCTTAAAGTACATAAATCTAATTAGAGCAGATTTGGAGCAATTTATCTCACCAaagaatcctctgcagtgaatgggtgccgtgagtccaaactgttaataaaaacatcacaatgataaagaagtaatccacagcactccgtTCTCTCAGTTACGAGTGTCCGTAGGAATCAAATCATGCgttaaggcattttaactttaaactgttgCTTCCTGCCAAAATATGAGTGAtctgtaataattattcattcagTTCACTGCACAGGATCCACTGATGAGcagatttctcttttaaaactcTATACTTCTAGATACCAATGAGGAGGCTCTTACCGGAACATCGCGCTACAAATAAGCAatgattatttgtattatttatccATCTTTATCTAAGTGACTTATTTTTCATTAGTGAAAGGCTGTAGCAATACTCAAAGATGAATCCGATTTATTTTGCAGCATATCCTGTGACTTTACATCCTCAGCGATGTAGAACAGCAGTTGAAGCAATTTCTTTACTCGCCTATAAGCAGATTTTTGTCACAACTGCTTTTACACTACTCATAATCTTGTGAAATCCTCGTGGGATGTGTCTCCTGTCGCATTCACACACCTCTGCTGCTGTTTTACACCTCTGCTCATGAGCGGCAAGTGTAATCTCTTTCTTATTGTGTCACATGGTAGCTTTCTTTATACTAAACTGTGCTatcccttgtgaaaaagaagtgtgcttaaCTGTACGTGCACATGCAGTGTACTTCAAATTTTTTAGgtgtattaaaaattaaaaaaaaaggtaatataatattatggaATTAAAAGGCCACTTAAAGAAAGTATACTTGTATAACTATTTCTTAATACACTTAGGTAACCTTTGTAATAATGTCAcaattaaaagtcattttaaatcattatgtgtaaaaaaaatctcttgtcATGATTcgtttttattaacatattaaagcTCATGTAAAGTGCTACTttggttaatttattttaaaagcactaaactacaacttcatcattacaaatgtatacatacagaattatttaaatatctgaCATAAAATGTTACACGGAATtgagattttaaatgaattcatgtTAATACAACGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23848 HPCAL4; hippocalcin-like protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194151 lncRNA downstream 20871 8175383 ~ 8176840 (-) True G131464
XR_006246989.1 lncRNA downstream 53516 8142931 ~ 8144195 (-) True LOC122323284
XR_006247118.1 lncRNA downstream 113815 8078100 ~ 8083896 (-) True LOC122324233
XR_006247114.1 lncRNA downstream 150832 8046276 ~ 8046879 (-) True LOC122324217
TU194130 lncRNA downstream 201317 7996092 ~ 7996394 (-) False LOC122323519
TU194202 lncRNA upstream 8836 8224819 ~ 8272803 (-) True G131495
TU194216 lncRNA upstream 32838 8248821 ~ 8249227 (-) True G131501
TU194221 lncRNA upstream 64011 8279994 ~ 8280260 (-) True G131506
TU194222 lncRNA upstream 66618 8282601 ~ 8282824 (-) True G131507
TU194223 lncRNA upstream 67115 8283098 ~ 8283441 (-) True G131508
XM_043217579.1 mRNA downstream 1892 8182020 ~ 8195819 (-) False bag6l
XM_043217582.1 mRNA downstream 1930 8182020 ~ 8195781 (-) False bag6l
XM_043217583.1 mRNA downstream 1931 8182020 ~ 8195780 (-) False bag6l
XM_043217581.1 mRNA downstream 1931 8182020 ~ 8195780 (-) False bag6l
XM_043217580.1 mRNA downstream 2255 8182020 ~ 8195456 (-) True bag6l
XM_043218008.1 mRNA upstream 71162 8287145 ~ 8320901 (-) False trit1
XM_043218007.1 mRNA upstream 71167 8287150 ~ 8320901 (-) False trit1
XM_043218006.1 mRNA upstream 71169 8287152 ~ 8320901 (-) True trit1
XM_043218206.1 mRNA upstream 106666 8322649 ~ 8326971 (-) True myclb
XM_043217432.1 mRNA upstream 160225 8376208 ~ 8412833 (-) False kiaa1522
XR_006247052.1 other downstream 68441 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 68453 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 592568 7602133 ~ 7605143 (-) True G131373
TU193918 other downstream 799765 7395180 ~ 7397946 (-) True LOC122324169
TU193894 other downstream 837600 7356621 ~ 7360111 (-) True LOC122323893
TU194205 other upstream 71311 8287294 ~ 8320885 (-) False trit1
XR_006247071.1 other upstream 73605 8289588 ~ 8320901 (-) False trit1
XR_006247069.1 other upstream 511276 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 535386 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 1092737 9308720 ~ 9309352 (-) True G131861

Expression Profile