RNA id: XM_043218473.1


Basic Information

Item Value
RNA id XM_043218473.1
length 3232
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC122324206
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13228815 ~ 13240727 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctctgcctttgtttttgtCCGTCTGCAGTGTTCTCATTCTCCACTAGAACTGCGTTTCCACCGGGCCCAAATGGCGACGTTTATTTCTGTCCCGTTGAAGAAGTCTTCGGAGGTCGACTTAGTAAAACCGTTGTCGAAATTTGTAACGTCCACGTATCCTCCCGGCGAGGAGCAGGCGGAGTATCTCCGTGCCGTGGAAGAGCTCAATAAGCTGCGGAAAAGTGCTCTTGGGAGGCCGCTGGACAAACACGAGAGCTCGCTGGAAATCCTGCTTCGATATTATGATCAGCTCTGTGCAATTGAACCCAAATTTCCTTTTACAGAGttatgtcTGACATTTACATGGAAAGATGCTTTTGATAAAGGATCTCTTTTTGGAGGCTCAGTCAAGCTTGCATTGGCAAGTTTAGGTTATGAGAAGACGTGTGTGCTGTTTAATGTGGGCGCCCTGGCCAGTCAGATTGCTTCTGAGCAGAATCTCGACAATGACGAGGGACTGAAAACCGCCGCCAAATTCTACCAGCTGGCGAGTGGTGCGTTCGCTCATATAAAGGACACAGTGCTCTCCGCACTGAATAGAGAGCCCACCATGGACATCTCCCCCGAGACGGTGGGCACGCTTAGTCAGATCATGCTCAGCCAGGCACAGGAGGTCTTCGTTCTCAAAGCCACTGCTGATAAGATGAAGGACGCCATTGTCGCTAAACTTGCCAACCAGGCGGCAGATTACTACGGCGACGCTTTTAAGCAATGTCAATACAAAGAGAATCTGCCTAAGtatttttatttccagGAAGTGCTTCCCGTCCTCGCCGCCAAGCACTGCATGATGCAGGCCACTGCAGAGCTGCACCAGTCAGCCTTggccaatcagaagaaaaaATTCGGAGAGGAGATCGCTCGGCTGCAGCACGCCACAGAGCTGGTGAAGACCGCAGCTTCTCGATACGATGAGTATGTTAATGTAAAGGACCTCTCAGATAAGATCAGTCGCGCCCTCACAGCTGCAAAGAAAGACAATGACTTCATTTATCATGACCGCGTGCCAGAGGTCAAAGACCTGGAGCACATTGGCAAAGCATCTCTGGTCAAAGCAACTGCAATCCAGACACCACTGAGCCAGAAGTTCACAGatCTGTTTGAGAAGATGGTGCCGATGGCAGTGCAGCAGTCAGTGAGTGCAGCCAATTCCAGGAAAGCTGACACAGTCAACAGACTGATTGGTAGCATGAGGGAAGCAACGAATCTCTGCAATGGGGTGTTGGCGTCTTTGAACCTGCCAGCTGCTCTAGAAGATCTGTCAGGAGATGCAGTCCCTCAGTCTATCCTTGAGAAAAGCCGTGCTATTGTTCAGCAGGGTGGCCTACAGAGTATTGAGCAGCTTATTAAAGATCTGCCCGAACTACTGCAGAGGAACCGTGAGATCCTGGATGAGTCCTTGAAGATGTTAGATGATGAGGAAGCAACAGACAATGAACTCAGAGGCAAATTCAATCAGCGCTGGAACAGAACTCCCTCTGGAGATCTGTATAAACCACTCAGAGCAGAGGGAAATAATTTTCGCAATATACTGGACAAGGCAGTGCAGGCTGATCAGGTGGTGAGAGAGCGTTACACTGCACATTGTGAGATGATTGCTTTGCTCTGTAAGCCAGAGAATGAGCTCAGTGCCGCCATACCGTCTGCCAACCCTGCCAAGACTCTGCAGGGCAGTGAGGTGGTAAACGTGTTGAGAGCTCAGCTGGCTCAGCTGGATGAGGTGAAGAGGGAACGGGAAGTTCTGGAGGGAGAGGTGAAGTCTGTGACTTTTGATATGACGGCAAAGTTCCTTACAGCACTGGCTCAAGATGGTGCTATTAACGAAGAGGTTCTGACCACCAGTGAGATAGACACTCGTTACGGCTCTCACACGCAACGTGTTCAGCAGAATTTGCGCAGACAGGAAGAACTGCTGTCACAGATACAGGTGTCTCATCAGGAGTTTTCAGTACTCAAGCAGTCCAACTCTGAGGCTAATAACAGAGAGGAGGTCTTGAAGAAGCTCGCCTCAGCCCACGATAGCTACATTGAGATCAGCTCCAATATCAAAGAGGGCACTAAATTCTACAACGATCTGACAGAAATCCTCTTAAAGTTTCAAAATAAGTGCAGCGACATTGTCTTCGCTCGCAAAACGGAGAGGGATGAATTGCTCAAGGAGCTACAGCAGAGCATCGCTCGTGAGCCGAGCGCTCCTTCATTCAACGTCCCATCATACCAGTCCAACACTCCTGTTCCTGCCCCAGGAGGTCCGACCCCTGCCCCCAGGACTGTGTTTACCCAGCAGCAGCCTCAGGCTAAACCCCAGCCGCCAGCCAGACCGCCACCGCCTAACGTCACTCCTCTGGCGGCCAGTACTTCAGCTCCCGTCAGTACTCCAGTGGCTCCCAGCAGCACTAATCCCCCACCTGTTGCACCACCCTCACAGGCTCAAGGACCACCCTACCCAACTTATCAAGGCTACCCGGGGTATTACCAGATGCCGATGGCTTATAACCCCTATGCGTATGGGCAGTTTAATATGCCATACATGCCCTATCAGGCCCAGGGGCAGGCTGGATACCCTGGAGCCCCTCCTGCACAGCAGCCCTACCCCTATCCTCAACAACCACCACAGCAACAGCCCTACTACCCCCAGCAGTAGAGCATACCTCTATCTCCTACAGCCACACTCATTCCTGTAAACTAGCACTCCTCTTACTGCACTCAACTATTAACACTCACTCTTGCTCTCTACTTAACATCTGGCTTTATCTGGCTCCGCCTCCTCTTTGTGGGTGGATATTTAGGCCAGTGTTCACAAAGCAGGTGTGCTCATCGAGGGAAGATCtgatctctgtctctctctctctctctctctttctctctgtcttacCCTCTAGCCCAAAGTGAAGCTGCTGGCTGCCTGCCACTGCTTATatcttatttttgtaatgaatacTGACATATAATCTAATGCAAGAGATGTTGATTTCTTAccttgatgatgatgatttaatTGCTGAGAGAAAGACCACGGTTCTGTCTTACTGTAACCCTAGTTGTATTATTATACCTCCTTCTGTTCGGTCTACAATCATCGCTTCGGGAAAGGAACAGTTACACAGCTTAGAGAATGGATTCGTCActaaaaatagttcatttttttgtgtttctattGTTTTCATGTGATTAAAACCTGTCTGATATTAAA

Function

GO: NA

KEGG:

id description
K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195751 lncRNA upstream 102198 13125877 ~ 13126617 (+) False G132549
TU195753 lncRNA upstream 102198 13125877 ~ 13126617 (+) True G132549
TU195738 lncRNA upstream 104849 13118716 ~ 13123966 (+) False G132547
TU195779 lncRNA downstream 68728 13309455 ~ 13336749 (+) True sdc3
TU196099 lncRNA downstream 270881 13511608 ~ 13512971 (+) True G132755
TU196098 lncRNA downstream 272295 13513022 ~ 13513896 (+) True G132754
TU196132 lncRNA downstream 314284 13555011 ~ 13556632 (+) False G132773
TU196133 lncRNA downstream 314284 13555011 ~ 13556589 (+) False G132773
XM_043218476.1 mRNA upstream 1160 13210147 ~ 13227655 (+) False ubp1
XM_043218475.1 mRNA upstream 1160 13211833 ~ 13227655 (+) True ubp1
XM_043218540.1 mRNA upstream 19659 13168464 ~ 13209156 (+) False clasp2
XM_043216933.1 mRNA downstream 4571 13245298 ~ 13255979 (+) True arpp21
XM_043216934.1 mRNA downstream 4571 13245298 ~ 13255979 (+) False arpp21
XM_043217449.1 mRNA downstream 33295 13274022 ~ 13276574 (+) True fabp3
XM_043217447.1 mRNA downstream 38804 13279531 ~ 13283732 (+) True snrnp40
XM_043217402.1 mRNA downstream 43934 13284661 ~ 13289734 (+) True nkain1
TU195256 other upstream 1704934 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 3300342 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 3589854 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 3690322 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 4064743 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 64279 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 1546817 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 1593910 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 1908577 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 2116013 15356740 ~ 15361845 (+) True anxa14

Expression Profile