RNA id: XM_043218480.1


Basic Information

Item Value
RNA id XM_043218480.1
length 2672
RNA type mRNA
GC content 0.45
exon number 11
gene id creb5a
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15661683 ~ 15668966 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGTTCAGGAATCCCACGTGACGTCACCGCGGGGTGATGTAATGCTTCTGTAAATAGATCATATTGTAATCGCGTTTCACTTCGGCGTGCTTCGTCCCAGCGCGAGGAGCGTTGCTAGTCTCGATCTGCGTGCGTTTTAGGTCTTTTAGATCTCAGTGATGAATGTTGATCAGGACAGGCCATATGTATGCACTGCTCCTGGATGCTCACAGCGCTTCCAAAGAGAAGATCACCTAATTATTCACAGACACAAACATGAGATGACCCTTAAATTCTCTTCTATTAAGTGCGACAGCATGCTCTCAGATCAGACTCCAACTCCAACCCGTTTCTTACGGGACTGTGAGGAAGTGGGCCTCTTTACTGACCTGGAGCTTAACCAGTCGCGGGTAGAGGAGGAGACCAAACCGAACTTTCCTGCACAGGCGTCAGGTCAGAGCCAGACTCACACTGAGACACAGCCTCAGCAGAGTCAACATCATCAGTTTCAACCTCAGCAACAGCAGCAGTGCGCTCTGGCTCATCTCAACCAGAACCAgctccacacacacagctcaccGCCTCAGTCTCAATGCACTGCCACATACTCCACTTCAAATAAACAATCTGCACCCAGCTGTCTGCACAGCAGACAGACAAATACCTTGCCTGGGACATCCGCCATGAATATGGAGGCACAGTTGTCAATGAACTCTAGTATGATTGGCATGCCAGGCCCCGCCCCCTCTGGCTCATGCTCCTCCCTTCAGaggtcaaaggtcatgccAGCTCACAGCCATCCTGCAGTTTCCAATGGCAGTCAGAATCCTCTTTGCCACATGATGGAGATGATGTCGTCACCACAGCACCCACTGTCACATTTACAATCCGCATCTCATCATCACGCATACCAGCAGCACTGCCACAGCCAATCACCGCAAAGACTCACACATCAACATCAAAGCCAAGACCAATCACATCACAGCCACGCTCACCATTCTCCACCTTCCCATTTGCATCCTGGCTCCACCCACCAGACAGCCCCTCCCCTTTCACATCAGCCGATACCGACGCAGACCCCCTGCCCGCAATCTCCTCCACAGCCGTCCGCAGCCAGACGCCGACGGACAGCAGAGGAAGACCCAGACGAGCGCAGACGGAAGTTTCTGGAGAGAAACAGAGCGGCCGCCACACGGTGCAGACAGAAGAGGAAGGTCTGGGTGATGTCGTTGGAGAGGAAGGCAGAGGAACTTACACACACTAACTTACAGCTGCAGAATGAGGTGACATCGCTCAGAACAGAAGTCACTCACCTGAAGCAAATTCTTCTTGCACATAAAGACTGTCCTGTATctgtgagacagagagaaacacagagtGGCGTGGGTAGTCCAACAGGAAGTCCTGTCCAGCAACACGCCATCCAACACAACAGCATCTCAACCTCAAGTTCAACTTTACCACACAGTCACCTCCCCCCACACTCACACCCCGCTAACCACACACAACTATAACATGCTTCGACAAGGACAGAAActgactgaaaacaaaaaataaagccatAAGGTCAGGACAGCTCCGACCAAGCAGGTACCCGTCAGTGCAAAAGCAAAACTGAACAGCAAAATGTTTCATCCTGAGTTTTAAACTCGGGTTTATGTCTAAAAGGGAATGTGTGAATTACAAATAAGtctgaaatgtttaataagTCTCAAGAatagaataattaaattaaattatgtctGTTTATATTTCCCTTTGCTTCTCAggtaatcatttttattttacctcaCTGTTATTCATTACAGTGCTGGAAAACAAACCTCCTAAATTTAGTTTTCCTATTCTCAAACCTGTCTCTCACCCTCTTTCCGTCTTCTCACATTCttcctcatgttttttttttttgttgttgtagtcaATCTTTCTCAGGGACACTCATCTAGTTTTACTCTTAGGTTATGTGTGTAttcgtgtgttttgttttttggccaCTTTCAGTGTAAACGCTTCGATAGCTTCAGTGACAGCTGTGCGTGCTAAATCCTGAAACCAATGGCAAGGCCGTGTGAAATGCATTGAATCAGGGCAGTTGTAAGTTTGTAATTGTAAATAGGATTCTCTACTTTTATAAATTCGTGATGAAGCTAAAGCTGACTGTTACATGTCCGTCTCCGCTGTAAATATCGTAAGAGGCCTCTTGGTGAATTATCAGGTAAGAAAGTACTTAAGTACTTAAGAGTATCATGTGTGAATTTTAGATTTATAGAATAACATGCATCTCATTCGATACAGGCAGAGCCAACATCACAATCAAGTATAGGAACGATAGTAAAGGGATCATGCATTAGTAATCCCACTCATGGCACTCTGAACGTCTTACAGTATTCTCCTAAAACCATCCAGCATAGCAATCCTTTCACACTAACTGGCTCAGTGACAATCAAAATGTCAATACCGACATTTCCTGGAAATAACATGCAAGCATGTGTACCatctctgattaaaaaaaaatgtttaggtaAAGAATTTATATGGTTATGAATTACGAATCTGGATATGTGGATGAAAAAGAATGTTTGTAAACTCTGCAGGTTTAAACTGTTTTATGCATGTAcagttttttgaaatatttatctatttttgtaCACATTCGTggccatttttaattaaaaaacacttaatatcTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196939 lncRNA downstream 35403 15625325 ~ 15626280 (-) True G133361
TU196938 lncRNA downstream 35542 15625325 ~ 15626141 (-) False G133361
TU196859 lncRNA downstream 180481 15480332 ~ 15481202 (-) True G133315
TU196857 lncRNA downstream 237185 15413975 ~ 15424498 (-) True G133313
TU196750 lncRNA downstream 277568 15383847 ~ 15384115 (-) True G133226
TU196952 lncRNA upstream 3217 15672182 ~ 15673003 (-) True G133370
TU196959 lncRNA upstream 12120 15681085 ~ 15681626 (-) True G133375
TU196960 lncRNA upstream 12793 15681758 ~ 15682073 (-) True G133376
TU196966 lncRNA upstream 68186 15737151 ~ 15737358 (-) False evx1
TU196967 lncRNA upstream 68652 15737617 ~ 15737824 (-) False evx1
XM_043217048.1 mRNA downstream 13155 15645080 ~ 15648528 (-) False LOC122323308
XM_043218226.1 mRNA downstream 19226 15636663 ~ 15642457 (-) True wipf3
XM_043217066.1 mRNA downstream 57592 15598655 ~ 15604091 (-) True LOC122323318
XM_043217064.1 mRNA downstream 65400 15588991 ~ 15596283 (-) True LOC122323317
XM_043217063.1 mRNA downstream 73971 15578624 ~ 15587712 (-) True smarcc1b
XM_043217654.1 mRNA upstream 16189 15685154 ~ 15702155 (-) True tax1bp1a
XM_043218293.1 mRNA upstream 67982 15736947 ~ 15740329 (-) True evx1
XM_043217413.1 mRNA upstream 165939 15834904 ~ 15839908 (-) True snx10a
XM_043217415.1 mRNA upstream 174718 15843683 ~ 15847374 (-) False cbx3a
XM_043217414.1 mRNA upstream 174718 15843683 ~ 15847374 (-) True cbx3a
TU196955 other downstream 963 15659919 ~ 15660720 (-) True G133373
TU196948 other downstream 13104 15644862 ~ 15648579 (-) True LOC122323308
unassigned_transcript_2196 other downstream 276417 15385195 ~ 15385266 (-) True trnap-agg_22
TU196741 other downstream 291947 15366434 ~ 15369736 (-) True G133217
TU196661 other downstream 769787 14891427 ~ 14891896 (-) False zgc:114119
TU197117 other upstream 253258 15922223 ~ 15924285 (-) True npy
TU197532 other upstream 611992 16280957 ~ 16508560 (-) False mbpa
TU197530 other upstream 682904 16351869 ~ 16508560 (-) True mbpa
TU197533 other upstream 690826 16359791 ~ 16508560 (-) False mbpa
TU197531 other upstream 831980 16500945 ~ 16508560 (-) False mbpa

Expression Profile