RNA id: XM_043218490.1


Basic Information

Item Value
RNA id XM_043218490.1
length 3611
RNA type mRNA
GC content 0.46
exon number 9
gene id fam131ba
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17554552 ~ 17577989 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacactcgctctcgcATACAGCCTTACAGAGACAGGAGGGGAGAGTCAGAGACgcggagaagaagaagaggagtgagagagagagagagagagaaggagagaatgTCTGCTGAGAGGGTGGCTCTCGTTCCTCGTTCACAAACCGGCCCTCGCTGAGACACCATGGGCTGTATCGGCTCCCGCACCATCACGGCGGATGCAGTTCCCGTTCGGAAAGATGGGGAGCAGCATGGACGTGCAGAGTTTTCCTGGGAAGGAATCAATCTGTCCATGGAGGACACCACCTCCATTTTGCCACGTCTGAAGAGGAACTCCAATGCCTATGGGATTGGGGCTCTGGCTAAGTCCTCTCTGACAGgCGTTACCAGATCAATGAAGGATAAAGTGACCAAGCCCACTGCCATGGCTCAGGGTCGTGTGGCCCATATGATTGAGTGGCAGAGCTGGGGTAAACCATCTGCGGGTCCAGAAGGGGGAGCGGGACGCTCCAATCTGAACCGTGAGAGGGAGAGACGGCTTGAAAATGATGCCTATAGTGACCTGAGTGATGGAGAAAAAGAGGCCCGAATGGCAGCAGgcaTTATGCAGCAGTTTGCCATTTCTGAAGCCACGCTCTTAGCCTGGAACTCCATGGATGGAGAGAGTCTCTGTGCCGACTCTAACCAGGGCAGCGTGGCTCACCTCAGTGAGGTTAACCAGGAGAGCATCACCAGCAGAGACCAGCCGTTGCATCATTCCTCTGCAGAAGTGTGGCCTCACACCTACGTCTCTCAAGGCCTGTACTGTCTCTCCTCCTCTGACGCGTGGGAGCCAATCAGCAACGAGCCCTCGGGCGTGGCTTCTCCTGCTGCTGGCTCTTATATCATGGCGGGCGGGGCTTCGGGAGAGGGTTATGATGGCTCCACCAACTAtttacagcagcagcagctgacaCTGCAGCAGCAGAACCACCTACAGCAGCTCCAACAGTATCAGCAgtaccagcagcagcagctcctgCAGTATCAACAGTCTTTGGAATATCGACTCCACAGCGCCTCCCACTCCTTACAAGCCACACCCAACAGCACTATTCACAGTTTGGGCCCGCCCACTCACCCGAGACTGGCTGACCTGTGGGCGGCGGCTCAGGTGGAGCCCCATCAGGTGGAGATGATGGGACACATGGGCATGACCATGGCCGAAATGGGAATGGCAGAAGCGTACGGCGAGGAATCTGTTGTGGAGACCGAATGCATCCCCGAGCAgcaagaggaggaggaagccaAGGAGGATGACATAACACTCACCCTCGAACCCGAGCCGACATCCGTAACTCCCGCCCTGACCCCTCCGCCTCAAAGAGAGGACTCCACCCCACCTGGGGGCATGAGCCCAGGGCAAGCACCAGCAGAGCCAGTGGCTGAGCACATGACCTACGAGGTCACATCCTGCGTCGTCCAATCGCTGGAGGAGAAGGAAGAAGAGGTCGAGGATGGGTCCGTTGTCGTTGTGGCAACCAACTGATGGTTCAAATCATGGGGCAGCCGAAAGAATGGAGcaaggaacaaaaaaataaaaaactgtctGTGAAATAATCAACCAGTTAAGCTATTGTATACGCCCTTTTACCCCAGATGTGTACTCGTACTGACTGTCACATCAGGAACAGATTTATTCGTTATTAAACGCCTAAAGAACACTCTCTGAGTGCCGGGGCGCATATAAAGACTAAACATAGGAGAGCGTCAAAGCCGGGATGATGCATTACAtgtactgctgctgctgctgctgttttatGGCGGGAGCGCTGGAGTCCAAGGCTGCTTGCGAATGAAAACAAAGAGTGCAATACTGAGAAATCAATACAACCAAAAGAAAgtgcatgcagtttttttttttgtttgtttgtttttttgggggagTATTTAAGTGACTGACTTAACAGTATCCacatagtaataatatatattgatttttgtaataaaactaaaagccAATGAaacaatatgtatttgtatgtatatataacatgtatgtactgtatgtatgttagtatgaatgtatgaatgtatgtgtctTTAAAGGTATATTCTGAAAAAACGTTGCGAATTTGCCGTTTGCGTGAAGTGTCCCCTATgtacctctcacacacacacacacacacacacacgcttactTTTATACaaacactgatacacacacacacacacacacacgtacacacccTGGAAAAGATGTTTTTGCTCTTAATATATTCAAGCACAATACTGCCCAAATGGAAACAGTGCTGCCCTTTTCAACATCCTAACTGTATTGTTACTAAGACTTATGCACTACTATGGACATAAACGAATGTATTGCCTATCTTCTTAGCGACAGCCcagttctgtatttttttccctacgttttttttttcttttctcatcaATGTCTGTGTTTATCTGCCTGACTGAGCTGCTCAATATTGATTTGCACTGAACAACAAAAGGAAAACTGAAGAGTCATCGTCGTCATTCCGGGAAGTTCCATTAATCTTCTCATGCAAAAAGAGGAGGAAACTTTGGATACTTATAATCCGTCGAGTCTTGAGACTACGGGAAACCGAACTGGGAATCCTGAAGGCAACTCATGGGTCCACTTTTGGTGAACTAATATGTAGAAGCCATTTATGTCACGCATATTTGCCATGTTATTTACGTTCTAGCTTTCGCTGTAGCTGACATAATGCAAAGAGATAAACTCTCATTACCTCAGTAAAATCACGTGGTAATGGGCTAGTTGACATGTTCGGTCACAGTATGTTTTTGTCACGACAGACCATACGACTGTGGAAAGTGAAAAGAAGGTGCTTTTCTGGTTAATGCTTGCAGGCTTTCcactaattatttaataagcTGTAATTGAAATACCCGCTGCAGAAAGAAGTGCCCTCGACTACTAGCGTGCACATCTCAATCCTTTGTCGAAACTCATATACGTtccaaaaaaaatagaaaaaaaaaagttttggaacATTAGCACTAATTTAGATTTAGAAGGCATTTGGTTTAGCATCGATATATATTCTTTGATGATTTCGAGAGTTTCGATTAATGCCGTTTATGCAATGCTGaggcaacatttatttttctatactAACGAGGCCTGCGAGTTGTCATTCTCTGTGGCATTTCGAACATCGCAGGACTAGCGTCTGCCGAATGAGAGTTGTTTTCACGGATCTAATGGCTGTGTTTGGAAAGAAATTCGAGATCAGGCGAAATGAGAAAGATTGAAGTGGATGATCTCTCGTGTTTAACGAACAAAATTACCTTCTTTGGGAAGAACACTCTCTCAGCATCTTTAATGGCAGAGCTCTTTGTGAAATGTCCAAAAGACGGCAATGATGTCACTGGGTCATATTTCGGTCATATTCCGGTCAAATTCTGTGAAATATGATGCATTTAGTGCAGAATGGCAATGCGGTGGAATGCAGTAATTGAGTTTTGATTACTAAggattataaaataaagctagGTATTGCGATCTTGCGGTTTCTTCAATTTCATTCGGTGTCATCCTGTAACCTCATTCAAATCATGTGCATTtgtgctgtaaataaaaaaaaaatccttattgTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197866 lncRNA downstream 209336 17325331 ~ 17345216 (-) True G133970
TU197844 lncRNA downstream 265172 17287667 ~ 17289380 (-) True G133951
TU197789 lncRNA downstream 286504 17265664 ~ 17268048 (-) True G133917
TU197792 lncRNA downstream 293053 17260710 ~ 17261499 (-) True G133920
TU197791 lncRNA downstream 303248 17248684 ~ 17251304 (-) True G133919
TU198250 lncRNA upstream 12007 17589996 ~ 17594324 (-) True G134245
TU198258 lncRNA upstream 20075 17598064 ~ 17670694 (-) True G134247
TU198267 lncRNA upstream 42185 17620174 ~ 17645633 (-) True G134252
TU198296 lncRNA upstream 211038 17789027 ~ 17789326 (-) True G134272
TU198298 lncRNA upstream 211562 17789551 ~ 17798825 (-) False G134273
XM_043217216.1 mRNA downstream 20444 17526412 ~ 17534108 (-) False styk1a
XM_043217215.1 mRNA downstream 21020 17526413 ~ 17533532 (-) True styk1a
XM_043217217.1 mRNA downstream 21847 17526412 ~ 17532705 (-) False styk1a
XM_043218353.1 mRNA downstream 61817 17484946 ~ 17492735 (-) True cacng6a
XM_043218352.1 mRNA downstream 61881 17484946 ~ 17492671 (-) False cacng6a
XM_043218092.1 mRNA upstream 29964 17607953 ~ 17612267 (-) True si:ch211-288g17.3
XM_043218093.1 mRNA upstream 29964 17607953 ~ 17612258 (-) False si:ch211-288g17.3
XM_043218094.1 mRNA upstream 29964 17607953 ~ 17612024 (-) False si:ch211-288g17.3
XM_043218404.1 mRNA upstream 35457 17613446 ~ 17616277 (-) True LOC122324164
XM_043218172.1 mRNA upstream 71893 17649882 ~ 17656526 (-) False si:ch211-288g17.4
TU197840 other downstream 220318 17330697 ~ 17334234 (-) True G133948
TU197841 other downstream 269808 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 335803 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 653776 16900705 ~ 16900776 (-) True trnap-ugg_15
unassigned_transcript_2203 other downstream 655951 16897995 ~ 16898601 (-) True LOC122324115
TU198224 other upstream 35491 17613480 ~ 17616238 (-) False LOC122324164
TU198368 other upstream 351700 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 351700 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 432893 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 606152 18184141 ~ 18188021 (-) False si:dkey-266f7.5

Expression Profile