RNA id: XM_043218491.1


Basic Information

Item Value
RNA id XM_043218491.1
length 680
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC122324215
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5531960 ~ 5532887 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGACTACGGGAAAGCCACTCAAAAATGTCTGAGAATATTTATGGAAATATAAACAATGATGGATAATGGGATGTGGACAGATGCACCGAGGGACACCAAACACCTCAACGCACagGTTGTTACTCAGTGAAGCTCAGAAGCTCCAGAGCAGCTGCAGTGTGTTTGTCGCTGGTGTGTGTTCTTCTTATGATCGCAGTCATAGCGTTGTGTGTCTGCATTCATACAAAGAACACAAACTGCACAGAAGAGTCACACCAGCTATTAATCaacctcacagaagagagagaccTGCTTCTAACAAAGTACATAAACATGATGAATGAAACGACTGAATTATTAATCAAGAACGACAACCTGACTAAACAAAGAGACCAGTTTAATCAAGAGAGAGATCAACTGCAGAAGTTTCTCACTGAAACAGAAGCATGGTTTCACTCTGACTTCGGCTTTTACTTCATTTCTTCACTGAAGAAGAGCTGGAACGAGTGCAGAAGATACTGTACAGAGAGAAAAGCGGATCTGATCACCATAAAGAACAAAGAGAAACAAGATTTTGTCAAAAACAATACTGGTGAAAGACAATTATGGATTGGTGTGACTGACGAAGAGAAAGAGGGCATATGGAAATGGGTTGATGGCACCAGCGTGATCTCTGGGTGAGAAGTCACTGAACTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193148 lncRNA upstream 26546 5503266 ~ 5505414 (+) True G130813
TU192888 lncRNA upstream 126394 5404453 ~ 5405566 (+) True G130664
TU192908 lncRNA upstream 145843 5382816 ~ 5386117 (+) True G130676
TU192909 lncRNA upstream 146412 5385136 ~ 5385548 (+) True G130677
TU192890 lncRNA upstream 174866 5356870 ~ 5357094 (+) True G130665
TU193185 lncRNA downstream 15620 5548507 ~ 5548799 (+) True G130833
TU193190 lncRNA downstream 32493 5565380 ~ 5587515 (+) True G130835
TU193218 lncRNA downstream 78101 5610988 ~ 5612338 (+) True LOC122324017
XR_006247088.1 lncRNA downstream 78225 5611112 ~ 5611964 (+) False LOC122324017
TU193224 lncRNA downstream 81377 5614264 ~ 5632428 (+) True G130855
XM_043217321.1 mRNA upstream 31364 5484922 ~ 5500596 (+) True eya3
XM_043217323.1 mRNA upstream 31364 5484940 ~ 5500596 (+) False eya3
XM_043217322.1 mRNA upstream 31364 5484940 ~ 5500596 (+) False eya3
XM_043218181.1 mRNA upstream 48292 5471782 ~ 5483668 (+) True si:ch211-195b13.1
XM_043218180.1 mRNA upstream 48292 5477886 ~ 5483668 (+) False si:ch211-195b13.1
XM_043217936.1 mRNA downstream 36843 5569730 ~ 5571271 (+) True LOC122323836
XM_043218363.1 mRNA downstream 50618 5583505 ~ 5585655 (+) True LOC122324139
XM_043216990.1 mRNA downstream 80181 5613068 ~ 5614130 (+) True LOC122323266
XM_043218065.1 mRNA downstream 183809 5716696 ~ 5717681 (+) True rpa3
XM_043218150.1 mRNA downstream 192481 5725368 ~ 5739185 (+) True col28a1a
TU192862 other upstream 217782 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 217782 5223700 ~ 5314178 (+) False G130640
TU192837 other upstream 352283 5176275 ~ 5179677 (+) True LOC122323259
TU192857 other upstream 368561 5162586 ~ 5163399 (+) True G130637
TU192810 other upstream 548716 4977885 ~ 4983244 (+) True G130613
XR_006247105.1 other downstream 50618 5583505 ~ 5585655 (+) False LOC122324139
XR_006246984.1 other downstream 212914 5745801 ~ 5752782 (+) True LOC122323254
TU193273 other downstream 252243 5785130 ~ 5922973 (+) False LOC122323983
TU193467 other downstream 930196 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 987033 6519920 ~ 6526080 (+) True G131042

Expression Profile