RNA id: XM_043218536.1


Basic Information

Item Value
RNA id XM_043218536.1
length 6326
RNA type mRNA
GC content 0.51
exon number 42
gene id clasp2
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13168463 ~ 13209156 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTCAAGGCCTCGGCCCAATCACTCTTCCTCGGGATCGTTTGCTATTCAACACTCCAGTATTGCGGCTACTGGCGGTCCAGTAGCGTTAGCCGCGATCGCTTCTTGAGTTCAGAAGGCAGCTGTCAAAGTGCGGATTATTTTTGGATTAAGTGCAAACAGGAGAGCGTCCCGCGTCCCGGCGGCTCATCCACTCATCACCCGAGCGGCGTGAAGCGGGCTTTTCTGAAATGGAGGCCAGGAGGGAAGAGAGCCCCGGCGGCAGGCCCCAGGATACTCGACCATAAGGGTTAAAGCTAGCACTGTTAGCCGAGACTGCCTGCCCTCGGTCGGATacatttcctttgtttttatgCGCGCCTCGCAGCGGAACCCTTTTACTTCACTTTGCGCCACTTTAGTTATTTAGTGGAAACACACTTTTTGTTCGGGGGATCAACCATTTTGTTTTTGGGAAACTTTGtcaaagttgtttatttttcgTTACCGCACTAAACATCAGACCCAAGCGCCCTCGGAGTGTTTTCAAACGCAGTATTCGACTTCCTCGTTGCACACGTTTCGTTTTCTCGCGCCGTTTACGCGACGCCGACAGTCACTCTGTCGTTGTTATTGTTTCGCCGCAACCTGAGGACTGACCACAGAGCGTCCCGATGGAGGAAAATGACAACATGGACTATTTTTACCAGCAGGTTTTGCAGAAGGACGTGACCCGGCGGCTGCAGGTCGGCCCGGATCTCATAGACTACCTGAGCGACCCGCAGAGGTCCTGGGACGTGGAGCAGGACAAACCCCGTCTGGATAAAACCATAGATGAGCTGACGGGATGGGTCAATTCCAGCAATTACAAGGTTGCGCTGCTGGGGATCGATATCGTCAGCGCATTTGTGGATCGGATGACTGATCGCTTCAGAGGTTATATCGGCACAGTGGTGCCTGCATTAGTTGACCGTTTGGGAGATGCAAAGGATCAGGTTCGAGAACAGGCACAAGCACTCATTTTGAAGCTGATGGAGCAGACGGCAACACCCATGTATATTTGGGAGAGGCTGTTTCCTTGCTTCAAACACAAAAACTTCCGCAGCAGAGAGGGGCTCTGTTTGTGCTTGGTTGCCACACTAAATGCttttggcgCTCAGCCCTTGAGTTTGAGTAAATTTGTTCCACATCTCTGTTCGCTAACAGGAGACCAAAACCCCCAGGTACGGGAGGCAGCTATAACAGCCCTAGTGGAGGTGTATCGGCAtgtgggagagagagtgagagcgGACCTCAGCAAAAGAGATCTACCGTCTGCACGgttaCAGACCATTTTAAGCCGTTTTGATGAAGTACTGAATTCAGGGAACATGGCTCTTAGCCTGAGTCAAGATCGTAGTTTTGACGATGATGACTCTGTGGATGGAAGCAGACCGTCATCGGCTCAGGCTGCTTTTAAAGTGCCCAAAGTACCCAAGAAACCCGGAGACTCTGCCAGCAGTTCCAGACGACCCAGTGCCACTGGAGCTGCCAAGACAGGTGTCTCTAAGGAGGGGGCAGGAGCTGTGGATGAGGAGGATTTTATCAAAGCATTCACAGACGTCCCCACGGTTCAGATCTACTCTACACGAGACTTAGAGGATAATCTGAACAAGATTCGTGAGGTTCTATCTGATGATAAACATGACTGGGACCATAGAACAAATGCGCTAAAGAAAATCCGATCTCTGTTGGTTGCCGGGGCAGCAGACTATGATTGTTTTTACCAGCACCTGCGTCTGTTAGATGGCGCATTTAAGCTGTCGGCAAAAGACCTGCGTTCTCAGGTGGTGCGGGAGGCTTGCATCACGGTGGCGCATCTTTCCACGCTATTAGGGAATAAGTTTGATCATGGAGCCGAGGCCATTGTTCCAGTGCTCTTCAATCTTATCCCTAACTGTGCCAAAGTGATGGCCACATCTGGCACAGCAGCCATACGTATCATCATACGGCACACTCATGTCCCACGTCTTATTCCTCTCATCACTGGGAACTGCACGTCAAAGTCTGTGGCCGTCCGGAGgCGCTGTTATGAGTTCTTGGATCTTCTGCTGCAGGAATGGCAGACTCACTCTCTGGAGAGGCATGTGGCTGTGTTGGTGGACAGTATTAAGAAGGGAATCAGAGATGCAGACTCAGAGGCTCGAGTGGAGGCCAGGAAggcaTACTGGGGGTTGCGGGCTCATTTCCCCGGGGAGGCAGAGTCTCTGTATAACTCGTTAGAATCGTCCTATCAGAGGACACTTCAGTCGTGTCTAAAGAGCTCGGGCAGCGTTGCGTCTCTGCCGCAGTCGGATCGCTCGTCCTCCAGTTCGCAAGAAAGCCTTAATCGGCCGCTGTCAAAGTGGTCAGCTGCTCCAGGCAGAGtACCTGCTAGCTCAAAATCATCAGGATCTCCAGGCTCTTTGCAGCGCTCCCGCAGCGATGTGGATGTTAACGCAGCCGCCGGTGCTAAAGCCAGACACAGTGGACAGACTGGAGGGGCGGGCAGAGTCACGACAGGCCTGGCCCCCGGATCATACGCATCTCTCGATGATGCCTCTGATAAGGATGGGCGACTACGGACTAAGCAGACTTTATCAACGGCGTCTAGCATGGGCAGCAGTCAGGTGGACTCGAGAGGCCGGACCAGATCAAAGATGGCGTCTCAATCGCAACGTTCCGACGATTCTGATTGCACGCCAGGATCACAGTCTGCTACCCCTGTTGGTGCGGGTTCTCGCTCGGGATCCCCAGGCCGGGTTCTGACCAGCACAGCTCTGAGCACGCTCAGTACAGGAGCTCAGCGTGTGAGCGCAGCTCCGGGGTCCCACCGACGCAGCCGGATCCCACGCAGTCAAGGCTGCAGTCGAGACTCTAGCCCTACTCGCCTCTCTGTTGCTCCTTCAAACATCAGCCACATCTACAACGGATCAAAAGGAGCGAGGGGTAGTCGTATACCACGACCTAGTGTGAGTCAGGGCTGCAGTCGTGAGGCCAGCCGAGAGAGCAGCAGAGACACCAGCCCTGTGCGCTCCTTCACGCCGCTCGcaTCCCGGCATTATTCTCGCTCAACTGGTGCTCTTCATGCCCCAGATGCCTTCGGGGCAGCAGGTTCTGGGTTGGGTATGTCTCAGTCCAGTCGTCTCTCATCCTCAGTTAGTGCCATGAGAGTGCTGAACACAGGATCGGACGTGGAGGAAGCCCTGGCTGACGCtctgCTATTAGGAGATATGCGGGGCAAGCAGAAGAAACCAGCTCGACGGCGGTATGACACCTATGGGATGTACTCGGATGATGATGCAAACAGCGACGCCTCCAGTGCGTGCTCAGAGCGTTCGTACAGCTCCCGGAATGGAAGCATTCCAACGTATATGCGGCAGACTGAGGATGTGGCAGAAGTGCTCAATCGCTGTGCCTCTGCCAATTGGTCTGAGAGAAAAGAAGGTCTGATGGGATTGCAGGCATTGTTAAAAAACCAACGAACTCTCAGCCGTGTTGAGCTGAAGAGGTTGTGTGAAATTTTTACGAGGATGTTTGCAGACCCACACAGCAAGGTGTTCAGCATGTTTTTGGAAACGTTGGTGGACTTCATTGCGGTTCATAAGGAGGATCTGCAGGACTGGCTCTTTGTCTTACTAACACAGCTGCTGAAGAAAATGGGAGCGGATCTGCTCGGCTCAGTACAAGCCAAAGTACAGAAGGCCCTAGACGTCACGAGagaaTCTTTCCCGAATGATCTACAGTTCACTATCCTAATGAGATTCACAGTTGACCAAACACAGACACCCAACTTAAAGGTGAAGGTGGCCATTTTGAAGTACATAGAAACACTCACACTACAAATGGAGCCACAGGATTTTGTCAACTCGAGCGAAACCAGACTGGCAGTGTCGCGTATTATTACGTGGACCACCGAACCCAAGAGCTCCGACGTCAGAAAGGCAGCACAGTCTGTGTTGATCTCGCTGTTCCAGCTGAACACACCAGAGTTCACGATGCTTCTAGCTGCACTGCCTAAAACCTTTCAGGATGGAGCCACCAAATTATTGCAGAACCACCTACGAAACACAGGCAACACATCCCAGgcTCCAATGGGAAGCCCGCTCACCCGACACACTCCAAGATCACCAGCCAGTTGGTCGAGTCCTTTAACGTCCCCTACCAATACATCACAAAACACACCTTCACCAAGtgCATTTGATTATGATACAGAGAACATGAACTCTGAGGAGATCTACAGCTCCCTGAGAGGAGTCAGTCAGGCCATCCAGAACTTTAGTGTCCGCAGCCAAGAGGACATGACGGAGCCTCCAAGAAAAAGAGATGGAGATGGTGGAGAAGAGGGTGGTGATCAGCCCACAGACTCTGGTCGGACGGTGCTGGATAACAAGACCTCTCTGCTAAATACTATGCCACTCCTCTCCTCGAGTCCCCGCCCAACAAGGGAATACCAGCCTGTCAGCTACTCGGACTCTTCTTTCACCTCCTCCCCTTTCAATAAAAGCCTGAAAGATGCAGACCAAGATGCAGAGTCCCTCACTGATGACAGCGGCGTGGACCAGTCTGAGGTGGTTGCTGAACTCCTGAAAGAGCTGTCGAATCACAGCGAGCGGGTAGAAGAGAGGAAAGCCGCTCTGTGTGAGCTAATGCGGCTGATCAGAGAAACGCAACTGCATGTTTGGGACGAGCACTTCAAAACCATCCTCCTGCTGCTCCTAGAAACACTCGGGGATGGAGAGCATGTCATTCGGGCATTAGCGCTGCGGGTGCTGAAGGAGATCTTAAACCGGCAGCCGTGGCGCTTTAAAAACTATGCGGAGCTCACCATTATGAAGACCCTAGAAGCACATAAAGACCCGCACAAAGAGGTGGTACGGGCTGCAGAAGAAGCAGCGGCTATGTTGGCGACCTCAATAAGTCCCGATCAGTGTATTAAGGTGTTGTGCCCCATCATCCAGTCGGCtgattaccccatcaacctagCTGCCATCAAAATGCTCACCAAAGTCATTGACCGGCTGCCCAAAGAGGGTCTCCTTCAAATGCTCCCTGAGATCGTCCCAGGGCTCATTCagGGTTATGATAACTCTGAGAGCAGTGTACGAAAGGCGTGCGTATTTTGCCTTGTGGCCATCTATGCTGTCATCGGAGAGGATTTGAAACCTCACCTCAGCCAGCTGTCTGGCAGCAAGCTGAAACTGTTGAATTTGTACATAAAGCGAGCTCAGAGCGGCTCCAGCGGAAGCGACCAGTCTTCAGATGTGGGAGGGCAGGGCCTGTAGCTGTGCCGCCACCATTCAGAACTACAGCACTCTCTTAGTGCAGGGGGACCCTAGCTGGCTTTTTAACTcacatgcatacacaaacaaacaaacaaacacctaCACACGCTTGCCTACAGATACACAAAGCCGCATACACCTACACCGCTGGACACCCTCCTCCGGCCCCACAAAACCTTCCAGTGGGATGTGCGTCGAGGAACGGCGTCGGACTGAAACTCTTCCTCCAAACTAGGATCACCGTCACTCCGTGTGCATGTCCGAGAAACCGCTATCTGTGGCACAGATGGTGGATTGCTGATGTAGTTTTGTTGCCTTGTCAATGAGAAGATgtgtacgagtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtcagaTGGGGAGGGCGGAAACCCAGCAAAAAGAGGGGGTGTCGTGGGTGTCATTTTGTGCAACATGgaaattgtttctttttatcaAAGAGCTTTTGAGAAACTCAGATTTTTAAGATGAAGTTCAAAACTTCTTGGTCTGAGCGACACGTCATTAACGTTCCTAATTGCTCACTatcgattattattattaacggTCATATCAGTTCATAACAGCGAGCGGTTGGTCCAGCTTGCTCTATTATAAGACATACTTTGCTTGGCTTTATGCATGTCACGAATAAATCTGAACCTTTTTATCTGGTTGCGAACATGGCTTAGCGGGCCACGCGTCAGTCGCCCCGCACTCCCGAGATTCTCATCGCAGCAAGGCCACATGTGATACCGAACCACATAGGcaatatgtatctatatataccATAACAAAGGAATATTCAAGAAGATCTCGTGATGTCCTGAGGGCGTGTGGATTCTTTTAAGTAGCATAGTGTCATTCTTCTCTGATGGGAAAtttgtagaaatgtatttaCGCATCTAAATGCCGCAACTGTCTTGTCACTTCTTTCCTGTAGTGTCGGTCTTTCTCCACCCTTAAGGAAGTTCTCTTTCTTCCCGCTGCATTTCTAGAACTGTGCTAAcgatgaaattaaaataaagaaaatgtacagtaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195751 lncRNA upstream 41846 13125877 ~ 13126617 (+) False G132549
TU195753 lncRNA upstream 41846 13125877 ~ 13126617 (+) True G132549
TU195738 lncRNA upstream 44497 13118716 ~ 13123966 (+) False G132547
TU195779 lncRNA downstream 100299 13309455 ~ 13336749 (+) True sdc3
TU196099 lncRNA downstream 302452 13511608 ~ 13512971 (+) True G132755
TU196098 lncRNA downstream 303866 13513022 ~ 13513896 (+) True G132754
TU196132 lncRNA downstream 345855 13555011 ~ 13556632 (+) False G132773
TU196133 lncRNA downstream 345855 13555011 ~ 13556589 (+) False G132773
XM_043218109.1 mRNA upstream 1030 13156264 ~ 13167433 (+) True fbxl2
XM_043218328.1 mRNA upstream 25497 13139261 ~ 13142966 (+) True LOC122324110
XM_043217983.1 mRNA upstream 54382 13104681 ~ 13114081 (+) True si:dkey-166k12.1
XM_043218086.1 mRNA upstream 69426 13090763 ~ 13099037 (+) True pogza
XM_043218476.1 mRNA downstream 991 13210147 ~ 13227655 (+) False ubp1
XM_043218475.1 mRNA downstream 2677 13211833 ~ 13227655 (+) True ubp1
XM_043218473.1 mRNA downstream 19659 13228815 ~ 13240727 (+) True LOC122324206
XM_043218474.1 mRNA downstream 19659 13228815 ~ 13240727 (+) False LOC122324206
XM_043216933.1 mRNA downstream 36142 13245298 ~ 13255979 (+) True arpp21
TU195256 other upstream 1644582 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 3239990 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 3529502 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 3629970 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 4004391 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 95850 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 1578388 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 1625481 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 1940148 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 2147584 15356740 ~ 15361845 (+) True anxa14

Expression Profile