RNA id: XR_006247031.1


Basic Information

Item Value
RNA id XR_006247031.1
length 743
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122323628
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 9553543 ~ 9555368 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTAGCCTGCGTGGGATTGTAGACGCAGAAAGGGCCCTGAACGGTGTGGTCAACAtcaacaaaacatcaaacatcCACCTCAGATACACGTCTAGGAGAGGCAGAGCTTTACGTAACATTAGGACGCCAAAAAGAGGAAGTCGGCGCGGTGATGCAGAGGCGGTGGAGGGTGTGACTGTGAGAACAGAGAGTTCCTGCAGACGTCCTGAAACAGTGAAGAAACACGGGACAGCTTCTCTCCAGGCTTGTGACTCAGAccgagtgagtgtgagagagtgcaGTGATGCTGGAAGAAAACTGCAGGAGagacacactaacacacacacaggaccgAATCCGCTCAGAAGCACATGACTTCAACTAGACCTGCATGATATCATTTGTGTGCTGATCAGCTCTAAATCACTGGACAGAAACCAGGCCTCAAATCTCAAATCTCCCTTGACGCTGCTGTTTCTCTCGGTCTCACACTTTGGAAAACAATGAAGACACAGGCTAGTCTTCGTTCAGCCCAGGTCACATGACAACACTGCAACGAGGCACAACCCAAGTTTGTTACGCTTTTCTTCAGGCCTGATTTCAAGAAACTATCATAGCCCAAAAGATTTGTATTGAATTATAAACTTTTGTGCATGTATAATTGAGATGATTTCTTATAACTGAGAAACCATTAGCTAGTTTTGTCAAAAACCTCTGCCCAATAattatagtttaataaaaaaaaattataataattgtaata

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function
GO:0016900 oxidoreductase activity, acting on the CH-OH group of donors, disulfide as acceptor molecular_function
GO:0047057 vitamin-K-epoxide reductase (warfarin-sensitive) activity molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194747 lncRNA downstream 58889 9492413 ~ 9494654 (-) True G131882
TU194700 lncRNA downstream 284395 9260334 ~ 9269148 (-) True G131852
TU194699 lncRNA downstream 285235 9260334 ~ 9268308 (-) False G131852
TU194701 lncRNA downstream 285235 9260334 ~ 9268308 (-) False G131852
TU194681 lncRNA downstream 335882 9141853 ~ 9217661 (-) True G131838
TU194766 lncRNA upstream 13702 9569070 ~ 9571386 (-) True G131896
TU194771 lncRNA upstream 35958 9591326 ~ 9591856 (-) True G131899
TU194777 lncRNA upstream 47753 9603121 ~ 9644847 (-) True G131903
TU194794 lncRNA upstream 92181 9647549 ~ 9648024 (-) True G131910
XR_006247020.1 lncRNA upstream 217943 9773311 ~ 9774463 (-) True LOC122323520
XM_043217358.1 mRNA downstream 25556 9521341 ~ 9527987 (-) True azin1b
XM_043217359.1 mRNA downstream 32404 9516444 ~ 9521139 (-) True rrm2b
XM_043217939.1 mRNA downstream 38525 9507489 ~ 9515018 (-) False mtdha
XM_043217938.1 mRNA downstream 38527 9507489 ~ 9515016 (-) False mtdha
XM_043217937.1 mRNA downstream 38527 9507489 ~ 9515016 (-) True mtdha
XM_043217086.1 mRNA upstream 24207 9579575 ~ 9584771 (-) True klhl38a
XM_043217087.1 mRNA upstream 25187 9580555 ~ 9584773 (-) False klhl38a
XM_043217982.1 mRNA upstream 75873 9631241 ~ 9638982 (-) True trib1
XM_043217018.1 mRNA upstream 103988 9659356 ~ 9664456 (-) False cibar1
XM_043218288.1 mRNA upstream 353736 9909104 ~ 9911742 (-) True lrrc69
TU194713 other downstream 244191 9308720 ~ 9309352 (-) True G131861
XR_006247085.1 other downstream 795870 8751369 ~ 8757673 (-) False hey1
XR_006247069.1 other downstream 814757 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247071.1 other downstream 1232642 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 1232658 8287294 ~ 8320885 (-) False trit1
XR_006246990.1 other upstream 104527 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 752590 10307958 ~ 10311928 (-) False elp2
TU195129 other upstream 752590 10307958 ~ 10310675 (-) False elp2
TU195233 other upstream 1614902 11170270 ~ 11170913 (-) True G132219
TU195332 other upstream 2170955 11726323 ~ 11737482 (-) False LOC122323871

Expression Profile