RNA id: XR_006247047.1


Basic Information

Item Value
RNA id XR_006247047.1
length 1521
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122323683
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 19414899 ~ 19421472 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCATTTCTGGACGTGATCCCAAATCATGCTTATGACACCATCGGTCTGAGAGACGCCGCAGCTCGGGCTGAACCTGCGTGAGTGCGCGGCAGTAATCGTATCTAATGGCCTCTTCCCGCACAACAGGTTGTGATCAATTTAATGAAGATGCATCAAggcatttttttatgaaatatgcagTGTGCGTCTAGAAAGTGAACTGCCATATCGCCAGTGAGTCTGCAGTTTTAAGGACGTTCCATCAGCGGGGAGCAAAGAAGCAGAACTTCCTGGCTCTAAATCcgAACTGCACAATGCATACGTTTGTACCATGCTGGTTGTCAGACAGGAAGTAATCCAGCGGACATTGGCCTTAACCTCTTAATTTGAGTCATGGTCTGAAATCGTTCAATAAACACTCAGAAAGTCATTCGGTGAGTCACAAGCTTCCTTGTATTCAGTTAAGATGCTGCTTTGCCTTCTTTGAAGGTGTTTTCCTGCTCATTCAGAGCTCATTGCAACATTTATGAAAGGTTGATAttatataaatctattaaaatgcattttaatacagcacaacattttgcacattttgaaaCAGAATTCAATAACCCCAAGCACAAAAGAAGAATCCATCTTAGTCTCCGCATTGCCAAAGACAAATAATGTATGCAACAACTAGTTCAGTGATTCTGCCTAGAAAAGCTTAAAAAACCGCTGACTCTGCTCAGAAACCCTCCAACAAGATTTTAGACGGCGCACATCAGCAGACTCAATTCTGTTGGGTTTATGCAAAAACGGCAACGAATTAAGTTGTTGAACTAGAAAATCTAATACTACAGTTTGTCATCGTACAGCGCATTCcttgaactgaaatgaattaGTATTTTCTGTGTTGAGGCACGAATCGACTTCGCCAGCCTTGAACTACAAACACGTTTCAAAAGTCAAAGTCAGGTAAACCTCTCTCTGACTCGAGTACACTCACGCCGTCTATTTTCAAAAGCAGCATTCACAGATATTAAAAGAGTAGTATGCTTTgttgttgtcacatgacctcttTATGCAGCATATACAGTTCGGCAAGTAAAGGATAATATCCTGTACATCCAGCTAAAAATCAACCCACGGCGCACAAAAGCAAACGGTTTTTAAACTTGGCAAACAAGTTCAAACATTATGGGTGTTTAAGGGAAAATGCAACTATaccacttatttttttttactacttgaATAAAGACtgtcatgaaatattgatttgaataTAATCCATTACAGTatacatttctatttgaatgtagtCAATAACTGAGGTGCAAGATGGCACTTTTTGTGCTTGAATAAAACGAGAGATTGTGTGCTACGGGAGATATTTAAACTCCATCTCATATACCCAGTGTATTGCCAGTTATTATACAGCTTTACTATTGGCGTCAGTCATTATTAGGAAAAACTGACCCAGAATGTCACAACAGACCAATCACAATCGAGCATTTCAGAGCACCGTTTGAGATTCAATTACCTTCTCAAAATATGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198898 lncRNA downstream 150602 19262718 ~ 19264297 (-) True G134632
TU198837 lncRNA downstream 356936 19047521 ~ 19057963 (-) True G134592
TU198672 lncRNA downstream 582050 18832232 ~ 18832849 (-) True G134504
TU198611 lncRNA downstream 725787 18688913 ~ 18689112 (-) False LOC122324083
TU198549 lncRNA downstream 828573 18572068 ~ 18586326 (-) True G134428
TU198957 lncRNA upstream 71063 19492535 ~ 19493032 (-) True G134675
XR_006247104.1 lncRNA upstream 76482 19497954 ~ 19528703 (-) True LOC122324126
TU199084 lncRNA upstream 424424 19845896 ~ 19846359 (-) True G134758
TU199086 lncRNA upstream 467148 19888620 ~ 19888828 (-) True G134760
TU199083 lncRNA upstream 503233 19924705 ~ 19969715 (-) True G134757
XM_043217334.1 mRNA downstream 6247 19380778 ~ 19408652 (-) True LOC122323475
XM_043218260.1 mRNA downstream 326116 19081572 ~ 19088783 (-) True rragcb
XM_043217572.1 mRNA downstream 334222 19063845 ~ 19080677 (-) False fhl3b
XM_043217571.1 mRNA downstream 334233 19063845 ~ 19080666 (-) True fhl3b
XM_043218354.1 mRNA downstream 380595 19029360 ~ 19034304 (-) True stpg1
XM_043217160.1 mRNA upstream 125742 19547214 ~ 19652803 (-) True khdrbs3
XM_043218178.1 mRNA upstream 264703 19686175 ~ 19688386 (-) False LOC122324012
XM_043218176.1 mRNA upstream 282324 19703796 ~ 19714904 (-) True st3gal1
XM_043218173.1 mRNA upstream 286333 19707805 ~ 19714904 (-) False st3gal1
XM_043218175.1 mRNA upstream 286333 19707805 ~ 19712668 (-) False st3gal1
TU198770 other downstream 481760 18876614 ~ 18933139 (-) False smim13
TU198769 other downstream 481760 18927521 ~ 18933139 (-) False smim13
XR_006247044.1 other downstream 1226878 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006246998.1 other upstream 121310 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 121310 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 249315 19670787 ~ 19688386 (-) False LOC122324012
XR_006247086.1 other upstream 264703 19686175 ~ 19688386 (-) True LOC122324012
TU199303 other upstream 960548 20382020 ~ 20382727 (-) True G134895

Expression Profile