RNA id: XR_006247061.1


Basic Information

Item Value
RNA id XR_006247061.1
length 583
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id LOC122323790
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12112991 ~ 12113745 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAGTGTTGGAGAGGAAAGGCTGGAAGACCGACTGGAAGTTTTCACTGTCCTGCTGTAAAAGTATGGGTCAGTTAATTAAACatctgccctctgctggccaGGTATTGAACACTCAGCTAAAATATtctgaaagacaagGGTGCCGAGATAAGACAGTGATACaaataaaagactaaaacaacagaaaaagagcaagagGAAGAATAAAGATGAGCCAGGAAAGAGAGACTGGACGATGGTGCCGTTGGGAAGGAGCAACATTTTAGTGAAGATCATTCTGTGGCTGACAGTCTCTGTCTCTGATTTCAAATGTACTTTGAAATCacacaataaaactaaacaatgttagaaaataacaatataataatgacatttgtGTATAGATAGGTACAAGAAATGATGAtatgattacaataaaattgtgatgaattaataaagaaagaatgaataaataaaaagaaagaaaatgaaacataattGTTTGGTGACTCTCTTTCATCAACTCACTTTTAATCCACATAAGTCTACGAAGAAGACGCTtaataaagaagaaataaaaatagaaaatatattatctCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195382 lncRNA upstream 994 12111527 ~ 12111997 (+) False LOC122323774
XR_006247060.1 lncRNA upstream 6321 12105788 ~ 12106670 (+) True LOC122323789
XR_006247065.1 lncRNA upstream 9178 12103312 ~ 12103813 (+) True LOC122323793
XR_006247059.1 lncRNA upstream 19761 12091760 ~ 12093230 (+) True LOC122323788
XR_006247068.1 lncRNA upstream 22443 12090085 ~ 12090548 (+) True LOC122323796
TU195383 lncRNA downstream 1014 12114759 ~ 12115354 (+) True G132305
TU195390 lncRNA downstream 76993 12190738 ~ 12192364 (+) False G132311
TU195392 lncRNA downstream 76993 12190738 ~ 12192364 (+) False G132311
TU195393 lncRNA downstream 76993 12190738 ~ 12192364 (+) False G132311
TU195394 lncRNA downstream 76993 12190738 ~ 12192364 (+) True G132311
XM_043217878.1 mRNA upstream 94 12111279 ~ 12112897 (+) True LOC122323774
XM_043217980.1 mRNA upstream 2164 12109556 ~ 12110827 (+) True LOC122323873
XM_043217877.1 mRNA upstream 14093 12097091 ~ 12098898 (+) True LOC122323773
XM_043217979.1 mRNA upstream 28160 12081248 ~ 12084831 (+) True LOC122323872
XM_043217885.1 mRNA upstream 35161 12076581 ~ 12077830 (+) True LOC122323780
XM_043217981.1 mRNA downstream 2785 12116530 ~ 12118582 (+) True LOC122323874
XM_043217884.1 mRNA downstream 4747 12118492 ~ 12119894 (+) True LOC122323779
XM_043217862.1 mRNA downstream 7650 12121395 ~ 12139784 (+) False sfpq
XM_043217861.1 mRNA downstream 7651 12121396 ~ 12139784 (+) True sfpq
XM_043217863.1 mRNA downstream 7651 12121396 ~ 12139784 (+) False sfpq
TU195256 other upstream 589110 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 2184518 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 2474030 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 2574498 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 2948919 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 1191261 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 2673799 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 2720892 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 3035559 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 3242995 15356740 ~ 15361845 (+) True anxa14

Expression Profile