RNA id: XR_006247096.1


Basic Information

Item Value
RNA id XR_006247096.1
length 1491
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id LOC122324050
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15022275 ~ 15035422 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTACTTTTCAAGACTCGCGCGACGCACCTGAACCAGaataCCGCATTGCCCTACacgtttaaaacaacataaggGTTGAGTGGACATGCTGTGGGAGACAGGTAGCAAGTAGTAAGCCCAGAAGTAAACAGCCATGTTGCCAGTTATGATGACAAACATTGTCTTGCAGTAAGAAGGAAGAGAGCGGGCCGTGCCTGGAGGTGTCAATGCCGAGATGAAGGTTCAGTGAGGAGGAACAGTAGACAGGAAGTGGGGATTTTGAAAAGCCACAGAGAAGCATCAGTCTTGGAGCTGCACAAGCACAATGACAGCTTGCAGGGAGAAAGTCCTCCATTGATCCAGACGGTGCAATATTCCCCACAGCCCAGTTCAGTCGCAcccaaaaagagagaaagaatatgGACGAGTATCAAACAGGCTGCCGCAAGCAACAATAAGCCCCAAATTCCCTGCGGGAAGACTATGAACTCTCGTTATTGTTGTATATGTCAGCCTACACATGCCTGCCGTTTGTTTCCGATGGAGAGCAACAGGAAAGTGCCAGCAAAGATCAGCAGCTAACGCTCAAAGGAATGAGTGAATGAACGCACTTCCCCAGGCTGGAAAACAGCAGTTGTCTCTGAATCTGCACGACTGAACGCTAAACAGGTCAACGAAGTAACTGCAGTGAGTCCTGTCaggtaaaatgtgtttaaaaagacACAGCACTTTGCTTTGCCGGTCTTCTGGCATCCATCATGGAACTACAGTAACTCAGTAACTACAGCAATGAAGACTACAATAAGACAGATTGCTGATCTTTAGCAGAGATGACTGGAGTACAAGGCAGGATTATTTCCTTTTCTCCTGTGTTGTAAATGTAAGtcttttgtgaattatttttgcTGTCTCTCGTAGGCACTTAGTGATTAATGTGTGTTTAGTGATCAGAACAGAAACCATACTGTACAGAGGCTTTTCCAAGATAGATTGTTTACcacatttaatgaatttatgtaTGCAGGTGTGATTTTAGTTTTCCTTGTTTTTATGCATATGATATAGTTGGAAAGTTCAGTAAGGGTTTGTAAGATACTTGATACTTTTAAGGATGTATTTCATCAATCAAACGTGAccgtgaagacatttataatgactAATAAGCGTAcacacattataatattattttttattagtgctgtggCTGCTGTGGCATCCAAAATCCCAAAGGTTTTagtttacttaatataaaagTTGTCATGCCCCTGGACTGTggttgtgttgtgttttcattccccatgtgctctctgtgcatGTGTGACCTAGCTTCTGTCTTGTGTTAATCAGTTCaaatgttcaggtgtgtctcattCAATTGAGTCATTGTCTCCACTTTTATAAGTTGATTTCTGTTCATTGTAAGTTGTCCGGTATTGTTTGTCGATGTTTCTATGCGGTTGCTACCCTGCTTGTAAGCTTACCTCTCTGTGGATTATTATCCGTGCGTTCC

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0051704 multi-organism process biological_process
GO:0046332 SMAD binding molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196536 lncRNA upstream 264299 14757624 ~ 14757976 (+) True G133068
TU196330 lncRNA upstream 439859 14175839 ~ 14582416 (+) True G132916
TU196327 lncRNA upstream 853791 14168095 ~ 14168484 (+) True G132913
TU196318 lncRNA upstream 916014 14097276 ~ 14106261 (+) True G132910
TU196282 lncRNA upstream 1174160 13846782 ~ 13848115 (+) True G132884
TU196596 lncRNA downstream 160635 15196057 ~ 15281004 (+) True G133109
TU196618 lncRNA downstream 274246 15309668 ~ 15312832 (+) False LOC122323314
TU196629 lncRNA downstream 339078 15374500 ~ 15378019 (+) True G133129
TU196781 lncRNA downstream 424916 15460338 ~ 15460706 (+) True G133253
TU196784 lncRNA downstream 446576 15481998 ~ 15483517 (+) True G133256
XM_043217239.1 mRNA upstream 60705 14958607 ~ 14961570 (+) True cdca8
XM_043217241.1 mRNA upstream 60705 14958648 ~ 14961570 (+) False cdca8
XM_043217240.1 mRNA upstream 60705 14958651 ~ 14961570 (+) False cdca8
XM_043217164.1 mRNA upstream 65330 14953377 ~ 14956945 (+) True cldn35
XM_043217481.1 mRNA upstream 70603 14935159 ~ 14951672 (+) True ago4
XM_043217398.1 mRNA downstream 43032 15078454 ~ 15192566 (+) True LOC122323518
XM_043217059.1 mRNA downstream 175745 15211167 ~ 15226683 (+) True LOC122323313
XM_043217395.1 mRNA downstream 196641 15232063 ~ 15276474 (+) True LOC122323516
XM_043217061.1 mRNA downstream 273305 15308727 ~ 15313877 (+) True LOC122323314
XM_043218343.1 mRNA downstream 278435 15313857 ~ 15319770 (+) True LOC122324124
TU196550 other upstream 184323 14834637 ~ 14837952 (+) False LOC122323257
XR_006247120.1 other upstream 1717131 13305006 ~ 13305144 (+) True LOC122324249
TU195256 other upstream 3498394 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 5093802 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 5383314 9636973 ~ 9638961 (+) True G131801
TU196586 other downstream 113882 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 321318 15356740 ~ 15361845 (+) True anxa14
unassigned_transcript_2195 other downstream 344048 15379470 ~ 15379541 (+) True trnap-agg_21
TU196767 other downstream 385713 15421135 ~ 15424492 (+) True cckb
TU196794 other downstream 534242 15569664 ~ 15577981 (+) True G133266

Expression Profile