RNA id: XR_006247100.1


Basic Information

Item Value
RNA id XR_006247100.1
length 3098
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC122324069
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2916462 ~ 2935657 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGTCCTCGCGGTCACGGGCTAATAATAGACCATCAGCGAAGACAGCTCTTGCTGGCGTTTCTAACCCGTTGAGATCACAGGAGGACGTGTCTTCAGGGACGTTGCCAGGCCGGTGGATGCAGGGACATCATGTTTTTAAGCTCTGTGACGAACTGACCATCTGTCCAGGGAGTCCCCTCCCGATGACCCAAGATGCTGACGCAGACTCCAGCCCCCCGTGACCCTAAAGAGGATCAGCTTTTTGgggaatggatggatggatggatgggtcaGGTAGTTAAAGGGAGGCCGCGCTGCTGTCGGCGTCACAGGAGACGGTGTTTAATGGCATGTTTTGCATGTGTCCGGGGAAAGATTGCAGATTAGTGGAGAAACCCCCTCTGGAGGAAAAAGCAGGcctgatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaggattTCCACTTAAGTCCAGGAGCACAGATTGTGGATACAGCACGGGCTGCAATGATGTAGCACTGATGTAAAGCTGAAAAAGTGCACATCAATCCcatatattgctattttgtaAGAGAATATGTTTAATGTGATCTCTTAAGTATGCCtgaatatatacaatatataagtatatatgtttgcagaaatataatataaatataataatcttaTCAAGTAGCACTACTATGCCGAGGTTATAGAACAGGGCGTTAATATGCGATATCCCACACCATATCAGATCAAATCAACGTCTGATCAATAGTATTTCCATTCTCGATATTGTTTTAACATATTCTAAAATGTCTCGActgacatttttcttaatgATAGGATGGAGGTCACCCACCGAATGAGATAACGTTCACACAATATGCAAACGACTCAAGAAAGCGCCTCACTGGAGATAATGTCAGCTTCATCTGTCCGCGGTTAATCGTATCAGCACACTCCAGCCAACCgattcaaatatgcaaaatattgtaACCTAGAGGAAGACGTTTTATTACGGGCCGCCTCTCACTTTAGAGAACTCTCGATAGAGAACACTTCATCACTGTTAACTACAGCCTTTCCCTCAATAACCGCTGCTTATTAAGAGTtagtattgggtaggattagggatgcagaataaggtCGTGTAGAACAGGACACTGTGTgcttaattagtactaataacCGGCTAGTAATACGCATgctaagcaactagttaagagagcctaaaataaagcgttaccgtAGTTTTATCTGTGATCGTTAAAATGCGTGGAAGATACAGAACCAAGCCTGCATTGCTATGCATGTCTTTTTTCGGCGGGACTTTTTAGGTCGATGAATCGGTGATATTCACACAACatctaaacaacatttttccCCCTCTATGAACTGAGAAGAGTCCCTGCAGGGGGCAGGAAATGCCAAAGTGGTGTCACAGTCCACTGAACAATGGCACCTCGCGGATTATTTGCCCCGCTGAAGTCATGAAACAATAACTAAAGCAAGTGCGTGTTAAGTCTAGACGGATGAAGAGCGGCGGGTTTTCAGATGAATGGAGATTTGGGAGGATTACAACGACCCTTCTCGCAATTCGGTCTGAAGTAGGAGCCGATAAGAACGATTTTATTCCCCGAGACATACTGTAATATTGTGCTTGGTGATAAGGTAATGATTGCTCCGGTTACTGCGCTCCGCCTCAGACTCTCTCTGCGTTTCTCGTCATGATTTAACAATGCGCCCTTATCCATTTCCTCCCGCAGCGACTCGCTGCGGACGACAAACACAACCGAAAGCGCCTGTGGAATTCCTCACAGGAATGTGCTGCACCTTACGTGCTCCCTCAGACTTTCCTGACCAAAACCGGTCACTGAGACAGAGAGGACAACGAAGATCGCTTAACGATGCGGCGGGAATAATGAGGTCATCGCGGAAACTTCGCTTTGGAATTGAGGATTCCTCGGAGAGCCATGTTAAGACAACGCATTAGGGAGAATTCGTCCTTGTATGACAATGCAAAAAATCGTGGGAAGAAAGTCTTATATACTATGATAaacgctctcagaaataaagctgTCGCTGGTACTTAAAGtgtgcatatttgaacctataggaacaaaagtgtacctttttgAAAAGGCGCCGCCCCGGGGCCCCAGCTTTTGTACCTCTATTTCTGACAGTGTACAGTAAAAGTTAATGGGGCCCAATGGGGCTCTTGTGGACCCCGCTGAATTTGCAAAAAGacttaatatagtttttttgtccatataagAAAGTAAGTCAAATTTGGAACCATGTGATggtaattattttcattttcagagtGTTATTTTTGCCCTTTGTGATAAAGAAGCGTACTGCATAAGTACTAGTAGTGAGCtagtaataaataaactgtACTCGCAGAAacttaaatgttaatgaaataaaaggcagCCGAGTTGAACTTAAAGCATGAACACATTCATGTTTCCTAATACACTTAAGTGCACTTTGTAGCAATGCACTTGCTAAAATACTTAAAcgtttcattaaatataaagtttcaATAGAAAGTATATTAGTTTACTCTAAATACCAGTAACTTTATATCAAAGATGATAGTTATAACATACTGTAATATAGTTTCCATTTATCACAATTAACATTACAATACACTTAAGTGTATTCTTTTGAAGAGCATTTTTCCCTTAAAGTAggttctctctgttctctctcttatACATATGTCTGCTATTTTGTGAATAATATATGAGTGATATAGTTTGCTGATATAATTCCAGGGTGTTGTGCGAGGTTGCTAATGCTGTAGGTGGTGTTTGGGTGCAGCAGGACGAGCGTAGTTTTGGTCATGTCACTAACCCTCCGTATGTGAGTAATACCTCCTTCTGCCGTCAGAAGCTGCTCACGCTGTTGTAGAACAGGTGAGAATGCATCCTTATCACAGGTGTTCAAAGAAATCCAAGCAATGACAAATACAATCACTTTCTTGGAATGTTGCAGAGATGATTCAGTTTTTGACAAATGTCTGAGAAGGGCAATGACGGTAGATGATAGTGcggacacacgcacacacacacacacacacacacacacacacacacacacacagagacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191988 lncRNA downstream 23989 2891639 ~ 2892473 (-) True G130040
TU191931 lncRNA downstream 40535 2875628 ~ 2875927 (-) True G130006
TU191926 lncRNA downstream 56385 2859860 ~ 2860077 (-) True G130001
TU191923 lncRNA downstream 112858 2787203 ~ 2803604 (-) True G129998
TU191910 lncRNA downstream 162722 2753416 ~ 2753740 (-) True G129987
TU192018 lncRNA upstream 37360 2973017 ~ 2974237 (-) True G130060
TU192042 lncRNA upstream 155119 3090776 ~ 3091407 (-) True G130076
TU192044 lncRNA upstream 157414 3093071 ~ 3093703 (-) True G130078
TU192046 lncRNA upstream 167296 3102953 ~ 3103362 (-) True G130080
TU192105 lncRNA upstream 377747 3313404 ~ 3314132 (-) False LOC122323345
XM_043217009.1 mRNA downstream 31811 2876924 ~ 2884651 (-) True maneal
XM_043217207.1 mRNA downstream 164929 2742586 ~ 2751533 (-) False LOC122323398
XM_043217017.1 mRNA downstream 180332 2733736 ~ 2736130 (-) True stmn1a
XM_043217738.1 mRNA downstream 658028 2253838 ~ 2258434 (-) True cited4a
XM_043218164.1 mRNA downstream 854737 2060114 ~ 2061725 (-) True LOC122324005
XM_043217092.1 mRNA upstream 68335 3003992 ~ 3022358 (-) True oprd1a
XM_043217090.1 mRNA upstream 377732 3313389 ~ 3323828 (-) True LOC122323345
XM_043218439.1 mRNA upstream 427824 3363481 ~ 3379927 (-) True zdhhc18b
XM_043218438.1 mRNA upstream 427824 3363481 ~ 3379923 (-) False zdhhc18b
XM_043218437.1 mRNA upstream 427824 3363481 ~ 3379922 (-) False zdhhc18b
TU191990 other downstream 4859 2908489 ~ 2911603 (-) True G130041
TU191925 other downstream 83506 2825344 ~ 2832956 (-) True G130000
TU191907 other downstream 164892 2740004 ~ 2751570 (-) True LOC122323398
XR_006247129.1 other downstream 597089 2319236 ~ 2319373 (-) True LOC122324259
XR_006247128.1 other downstream 597414 2318972 ~ 2319048 (-) True LOC122324258
TU192049 other upstream 213497 3149154 ~ 3149789 (-) True G130083
TU192945 other upstream 1872440 4808097 ~ 4941832 (-) True G130696
TU193036 other upstream 2151587 5087244 ~ 5104353 (-) False LOC122323502
TU193037 other upstream 2151587 5087244 ~ 5222883 (-) True LOC122323502
TU193035 other upstream 2165164 5100821 ~ 5104353 (-) False LOC122323502

Expression Profile