RNA id: TU199793


Basic Information

Item Value
RNA id TU199793
length 2729
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G135225
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1127292 ~ 1130076 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatgttttctttattgtagttcaaaattgtatttataatcgATTGTGTGGTACATACGACAACAAGAAATAACAGAAGCTGAAGTCATGCAGGTCATGAGATCGAGGTCACTGAAATGAAACTGCAGTAGAGTAACAATTATATCGTTTGCTGAAGAAGGGATTTTGGTTTCATCATTATCTGCTCTCAggaacacttcattttaaagtgcttttctgTGTGTACATACTGTGTCAAGAACTAGGTGCTAACTTCTGGCAAGTGTGTgcacaaactataaaataaagtgtcaaatttaaaaaattaattacaaagaaactaCAATCACAAATGGATGGACTAAAATAGATTGTTCAAGAACGCTAGTCTTTAATTTGGTGTTTAGCTGAGGCCTGGAGTTGTTTGACATATTATAATTACCCAGAGTAAATCACTGCTGTGTGCTGACCCAcgttcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtggtgtgtgtgtgtgtgtgtgtgtgtggtttatgaggacacaagtgtgtataatgacatgggtagTACAACATAAAAATGGCTGATGAAAAGGCTTAGAAAACATACTAAACATAGTGTTTAATGAAATTCAGAAATtgccagtagtttcctgtaaggggtaggtttaggtgtagggtgcTTTATAAAAATACGGCttgtacagaataaaaatcattacacctatgaagagtaCTCATAAAccgcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcagcaAAACCTTCTCTCGTTAGGCGTATAACAATGATTTACATGAatagcataaattaaaaaagaaatacaaaaaggaccatgtacaaaaagtaaaaaagagaCATTCTCCTCAAAAACATGGAAATGGTTCAATAAACCAAAGGATTTAAAAGACAGACGTATTGCTTGTAGGGGTGTTTTTAAGGCTGTGAAATGTGTATGTGATGCACTGAAATGAGTCGAACACGTTTGGTTGGTCGTGCCACTGATTCACAAACCAATCACTCCTCGGTCAATAATCCTATCCTCGAGGCACTGATAATGCTAGTCGATATAAAAGTAATGAAACATGGGATAGTTATGAAGTATGAGCACTTGGTGGCCGTCGTTTCAAGTGAGTTTCCGGCGATTCCCTTCTCTGATCCACCGATGATTCATCGTGTTACCTGAGGTAGATCATCCCAGGACCAGATTAACAGCGGGGCGTCTAGCTGCTTCAATGTGACTCGGACCCAGAGGACATTCATATACTGATTCTCTGAATTAAAGCAAAGGACTTCGCGTATGTGCTTTTTCAGTCAAGGCCTCAGTGGCAGTAAATGTGAAGGTGACACGATCGCTGTTAAAACTGAGCTCCGATCTAACCCACGGACGCGGCGGAGTcgtaaaaaaaactgtggcaGTTCTCGTCAAACACTGAGATCTGCTCCGGTAAGGCCAAAACTCTCCTGTAAACGTTCCAGAGCAGCGTTCCTCCAACATAAAAGCAACCTCACCGAGAACACTGAGACGGCATCAGACAACATCTGCTCTGTGCATTAAAGCAGCAAGACCGTAATTTCTCTGAGAAAATACCTCTTAGATagttgcatataaaaaaacactcacGGCTGAAGTGTGCAGTCACAAAAACACCTTCCCTATCTTCCCAGCTCAGGAGGAAATGAACACATATGGCACGGCTGACGTTCCCTTTAACACAATACATGAGCCACTTCATATAGTCTGACATCAAAATATGCATAGCTAGATTATGAGAGTAAAGGAAACATGGGTTAAAATAAAATCCCTTGATTCTTCTCTTAGGGCTTCATCCGTCAAAGCACCAGCAAACATCTTCCCTTCTTCACCGATGATTGTCTAACTTTCACTTCCCTTTTAAAGCCTAGAAGCTCGGTACAAAAATATTCAAGGAAACATTCTGAAAGATGCATAGCTCATAAATCACATTGGTGGAGAAGCCCTGTTTTATGCCCAGCCTGCACGTTCCTGCAGATATAGAAAATCACGTCAGGactctccacacacactcacacactcacacacacgtcagTCAGTCTGTCAGTCGCTCTCAGATGACGGACTCGGGCTCCTCGGGCTTCCCCTCCAACTGCACACCGTTCTTGTTCTCCAGCATCTTCTCGGTGGGTTCGGCCGCCGCcggctcctccttcctcctctTCCGCGCCTCCACCCACGGGATCAGGCACAGCACGGCCCCGCCGATGATCGGAGGAATGCCCGCCAGGTAAAACGCCACGTCGTAGCTGCCCAGACGGTCTCTGAGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199862 lncRNA downstream 20188 1106777 ~ 1107104 (-) True G135277
TU199795 lncRNA downstream 57403 1007146 ~ 1069889 (-) False G135226
TU199796 lncRNA downstream 57403 1067667 ~ 1069889 (-) True G135226
TU199789 lncRNA downstream 100411 1025472 ~ 1026881 (-) True G135222
TU199804 lncRNA downstream 202783 924266 ~ 924509 (-) True G135234
TU199887 lncRNA upstream 107884 1237960 ~ 1238160 (-) True G135297
TU199918 lncRNA upstream 157016 1287092 ~ 1287309 (-) True G135323
TU199938 lncRNA upstream 283727 1413803 ~ 1422222 (-) True G135339
TU199988 lncRNA upstream 423035 1553111 ~ 1555177 (-) True G135365
TU199993 lncRNA upstream 425192 1555268 ~ 1557577 (-) True G135368
XM_043218721.1 mRNA downstream 39712 1081075 ~ 1087580 (-) True slc35a1
XM_043219371.1 mRNA downstream 69244 1048850 ~ 1058048 (-) False LOC122324736
XM_043220162.1 mRNA upstream 10574 1140650 ~ 1146850 (-) True LOC122325202
XM_043218737.1 mRNA upstream 23988 1154064 ~ 1160381 (-) True LOC122324370
XM_043218775.1 mRNA upstream 32600 1162676 ~ 1164732 (-) True zgc:112001
XM_043219380.1 mRNA upstream 39720 1169796 ~ 1223016 (-) False lrfn2b
XM_043219378.1 mRNA upstream 39720 1169796 ~ 1223015 (-) True lrfn2b
TU199865 other downstream 16431 1110425 ~ 1110861 (-) True G135279
TU199860 other downstream 21474 1103306 ~ 1105818 (-) True G135275
TU199861 other downstream 24179 1102705 ~ 1103113 (-) True G135276
TU199811 other downstream 161897 939173 ~ 965395 (-) False G135237
TU199809 other downstream 187117 938165 ~ 940175 (-) True G135237
unassigned_transcript_2213 other upstream 323022 1453098 ~ 1453168 (-) True trnag-ucc_6
XR_006247319.1 other upstream 323554 1453630 ~ 1453745 (-) True LOC122325578
unassigned_transcript_2215 other upstream 325258 1455334 ~ 1455405 (-) True trnag-ucc_7
XR_006247320.1 other upstream 325787 1455863 ~ 1455978 (-) True LOC122325579
unassigned_transcript_2216 other upstream 326778 1456854 ~ 1456925 (-) True trnag-ucc_8

Expression Profile