RNA id: TU199795


Basic Information

Item Value
RNA id TU199795
length 1309
lncRNA type read_through
GC content 0.45
exon number 2
gene id G135226
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1007146 ~ 1069889 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTATGTAAACACTTTATTTGTATACTTTCCCAACATAAGTCATTTAAACTACAGGAGCAGTAAAACCATAATGCAGAGGAAAGgggcaaaaaaaaccaaaaataaatacaaagcatGAAAACAGACtccaatcaaaataaatgctgtatttgaTTTGTACATGAAACCTCCAGATGAAAGCCAGGGTGTATTTACACAAAGCTATGAACAGCAGTCTCCCTCGCACACCGCCTCACGTTTATCATGGCAATCGACATCATTCGCAGCGAATAAAAGGCATTTTACAAAATCGAAACATAAAAAAGGAGGATGAAATGACAGGCGACTGTATAAAAGGCATGGTCAGAGCCTAATAAATATCCAGGGTTCAGTAAGAGACACAAGAGCCACCGACTGGAGTAATATTAGCAGGTGAGGAGGATCGCTGCAGAGAGAGTGGTTACGCACTGACAGAAGCCTCTGAAGACCAGCTGGACCTGTCCTGAGTGTCAGGAGCTCAGACGAGAGCACGGCCGGCGCAGCGGGACAGCGCTCAGGACACATCTGAGGagcagagaacacacacacacgcacacacacacagagacacacacagagacacacacagagacacacacacacagagacacacacacacacacacacacacacacacacagacagagacacacacacagacagagacacacacacacagacagagacacacacacacagacagagacacacacacacagacagagacacacacacacagacagagacacacacacagagacagacagacagacacacacacacacacacacacacacacacacacacacacacagagggattCTCACGGTCCAGAAACGTCCCTCACAAGAGCAGAGTGATATTCTGCAGTCCTCCTAACACACACAGCGTCCTGAGAAACATCACGACAGATATGTGGGTCAGTGGAGCAGCAGAGCCCCTTCAGATGAAGATCGGAGCGCTGCGGGCCAGAGGACGGAGAACACTGATCTTCATGCTCTCTCTGAAGACACACCGAACGCTGCCTTTCACAACCACCGGCCAGAACAACATTACTGTAACTCTCAGCTTTATATCTGGTTACTTTTAATGAGAAACAAAGTCTACTCCTGAAAATCTTTCAAggaattcaaacaataaatgctgtataataataaatcatcatcAGTACTATATTCAactcaaaataaacatgaatcaaTCTCTCACTCAATCAGTGTTTCACCTGCAGAAGGACGTCAATAAAACGCTGTCGGGagcattttatgttatgttgGCATTATGAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199804 lncRNA downstream 82637 924266 ~ 924509 (-) True G135234
TU199802 lncRNA downstream 85268 921445 ~ 921878 (-) True G135232
TU199780 lncRNA downstream 88900 917428 ~ 918246 (-) True G135218
TU199765 lncRNA downstream 143264 863647 ~ 863882 (-) True G135214
TU199753 lncRNA downstream 241912 764744 ~ 765234 (-) True G135202
TU199862 lncRNA upstream 36888 1106777 ~ 1107104 (-) True G135277
TU199793 lncRNA upstream 57403 1127292 ~ 1130076 (-) True G135225
TU199887 lncRNA upstream 168071 1237960 ~ 1238160 (-) True G135297
TU199918 lncRNA upstream 217203 1287092 ~ 1287309 (-) True G135323
TU199938 lncRNA upstream 343914 1413803 ~ 1422222 (-) True G135339
XM_043219169.1 mRNA downstream 102055 867719 ~ 905091 (-) False med23
XM_043219168.1 mRNA downstream 102055 867719 ~ 905091 (-) True med23
XM_043218960.1 mRNA downstream 184741 767443 ~ 822405 (-) False epb41l2
XM_043218721.1 mRNA upstream 11186 1081075 ~ 1087580 (-) True slc35a1
XM_043220162.1 mRNA upstream 70761 1140650 ~ 1146850 (-) True LOC122325202
XM_043218737.1 mRNA upstream 84175 1154064 ~ 1160381 (-) True LOC122324370
XM_043218775.1 mRNA upstream 92787 1162676 ~ 1164732 (-) True zgc:112001
XM_043219380.1 mRNA upstream 99907 1169796 ~ 1223016 (-) False lrfn2b
TU199811 other downstream 41751 939173 ~ 965395 (-) False G135237
TU199809 other downstream 66971 938165 ~ 940175 (-) True G135237
TU199808 other downstream 66971 939173 ~ 940175 (-) False G135237
XR_006247189.1 other downstream 184688 753567 ~ 822458 (-) False epb41l2
TU199861 other upstream 32816 1102705 ~ 1103113 (-) True G135276
TU199860 other upstream 33417 1103306 ~ 1105818 (-) True G135275
TU199865 other upstream 40536 1110425 ~ 1110861 (-) True G135279
unassigned_transcript_2213 other upstream 383209 1453098 ~ 1453168 (-) True trnag-ucc_6
XR_006247319.1 other upstream 383741 1453630 ~ 1453745 (-) True LOC122325578

Expression Profile