RNA id: TU199802


Basic Information

Item Value
RNA id TU199802
length 434
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G135232
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 921445 ~ 921878 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACATTCTCTCTTTACTGAGTGATAGAAGACCTGGAAGAAATCACAGTATTTCATGACACACAATCACTCAATGGAGGGCATCCATCTGAACAGAAACAAGTCAATGCTACTGTAAGGGGTTCACTCAAAAGATAACAGGATGGAGACACGGTGAGATATGTTTAGATGTAATGGAAATCATTCTTCTAAAGATCTCACGCTGAGGAAATGTTTCTGGTCACTCGTCAACAGCTCTGGTCAGATCCAGCTTCATCGTGTTCGTTCCTCCTCTCAGTCCTGACAGGTACACCTGAGGTTTGGGTACGTTACTGTCTCCGTCCCGCTTCGTCTGGCTGGAGGCGTCTTTAGGGAGGAACGTCTGAGTGCTGTTGTGTCGTCTCATGTGACTCGAGTGCGTCTGCATGGAGCGTGTGACTTTATTCCGCAGATTGG

Function

GO:

id name namespace
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function
GO:0030354 melanin-concentrating hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199780 lncRNA downstream 3199 917428 ~ 918246 (-) True G135218
TU199765 lncRNA downstream 57563 863647 ~ 863882 (-) True G135214
TU199753 lncRNA downstream 156211 764744 ~ 765234 (-) True G135202
TU199736 lncRNA downstream 189014 731886 ~ 732431 (-) True G135195
TU199721 lncRNA downstream 212414 700539 ~ 709031 (-) True G135185
TU199804 lncRNA upstream 2388 924266 ~ 924509 (-) True G135234
TU199795 lncRNA upstream 85268 1007146 ~ 1069889 (-) False G135226
TU199789 lncRNA upstream 103594 1025472 ~ 1026881 (-) True G135222
TU199796 lncRNA upstream 145789 1067667 ~ 1069889 (-) True G135226
TU199862 lncRNA upstream 184899 1106777 ~ 1107104 (-) True G135277
XM_043219169.1 mRNA downstream 16354 867719 ~ 905091 (-) False med23
XM_043219168.1 mRNA downstream 16354 867719 ~ 905091 (-) True med23
XM_043218960.1 mRNA downstream 99040 767443 ~ 822405 (-) False epb41l2
XM_043218581.1 mRNA upstream 99752 1021630 ~ 1025274 (-) False gjb7
XM_043218578.1 mRNA upstream 99752 1021630 ~ 1025274 (-) False gjb7
XM_043218580.1 mRNA upstream 99752 1021630 ~ 1025274 (-) False gjb7
XM_043218579.1 mRNA upstream 99752 1021630 ~ 1025274 (-) True gjb7
XM_043219374.1 mRNA upstream 126972 1048850 ~ 1058048 (-) False LOC122324736
XR_006247189.1 other downstream 98987 753567 ~ 822458 (-) False epb41l2
TU199809 other upstream 16287 938165 ~ 940175 (-) True G135237
TU199808 other upstream 17295 939173 ~ 940175 (-) False G135237
TU199811 other upstream 17295 939173 ~ 965395 (-) False G135237
TU199861 other upstream 180827 1102705 ~ 1103113 (-) True G135276
TU199860 other upstream 181428 1103306 ~ 1105818 (-) True G135275

Expression Profile