RNA id: TU199988


Basic Information

Item Value
RNA id TU199988
length 1908
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G135365
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1553111 ~ 1555177 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCAGGGGGTGGGTGTCCTTCCAGTAGACGGTGTATTTTAGATGATGGCGGTGAATTATGAGACTCTGTGAGAGGATTCAGCCGTTTTTCCTGATGGACAGAAGCCATGGGAGCTGCAcgaaaaacaaactttaattttaatattacacgCCGCAGGCTTTAAATTTGATCAAGAGCACGTTTAACACAAGAATACCACAACTACAACATAACAGAAGAACAATATTACTGGGAACGCTTTCACAACAAGTTTTTCAGCTGCTGAATGACAGAGCTCAAACAGAACTATTGTAAATATGACTTTTCTAATCATgaattaaacacaaacagcCTCTCAAATCATACTGCAGACCTGTTCCTGCAGCGTTGAGCTCCAACCTTAATTTATCGTGCCTGGACCAGCTAATCAAGGCCTTCAGATTAACTAGAAGCTTTCTGGAAAGTGTGTTGGAGCTGGTTGAAGCTAAACGTTGCAGGATACTGGCTCTCCAAAAGCAGGATTTGGACACACTTGGCgtaaagaaaacagaatattCTATTCGTAACTCTTAACTAATATTGCTGTACATACGCGTGTATGTTTTCACGTTGGGGGATGGAGTTGCAGTGCTGTGATGTTTCGTTGCTGATGAAAGATGACAACAGAGCATTTGTTAGCAGCACAGACTCCGCGACCGAATAACTGCGTTTATACATTCGGGAATCAGCTAAATCGATTAAGTCTCACGCGATTTCTGAATGCACTCATTTATGCAATCAGACTTCTGGAGGAAGTTGTTGTGGTTTCCTTTGCAGCCACCGTACTGGAAGTGCTGGCAATCCCCCGTTTTAGCATCGTAATACCAGCGTGGGAAAACGCCTTTACATGGGCCGACCATTGGGGGCGCTGCACAGGGATCTGGcgcCTTGCGAACTGAAGCCATAATGTTGATGCTGTTCAGGTTTGGGGATATCATTAGGCTGTATTTCTGTGGGCGTCTGGGCTTCTGCTTCAGTTTGCATATCTGGCTCGTGTTTAGACGGGGGGTTGGACTTATGACCACTATAATTTTGGCAGAAATCTTCATCCGATCGGTCGGGACAGTGTTGCTTTCCATCGCAGGCATAACCGATGTCTATACAGCAGCCGTCGTCGCACAAGAACTGATACCGAGAACAGTGACCTGTACACACTTCAGAGAAACACACGCCGCTGTGTCACATTCGCGTAGATTCAGGCTGACGTTTTGCTGTTAATTAGTGCCCACTAAGTCCTAATTGAAACGACTAGGAGACAACATGACAGGACAACTCCCCAGTGTCCTGCTCTGTTCATTTATACTACGAAATGAACACATCTAATTGATGTCCAGTCAACATGGTCCTAAACCAGCCTAAATATACTTAACACCAAGTAGTATAGCATGTCGTTTTTCACATTCCTAACATGCAAGctctatctcacacacacacacacacaattgaaAAACGTATCATCCATGCTTACTGTTAAGGAAGATTAAGAGACGAATAATTTCTGACCTTCTGCGTTTGATGCCGGGGCGAGCACACTGACAGACACGTTGTCGGATCTCTTCTGTCCCGCGGCGTCGGTGACGGTCAGCTCAAAGGAATAAACTCCTTCTCTGAGACCACTGAGTTTCAGGAGGCCTGGGTGAGTCGTCTGCACAAATCACACAACGTATTTAAGACGAGCGAACTTCTCTGAACCGGTCCACTCTACCGATATATTCAAATAACTAAGCAGTGTTCATTTCGACAGCAAAGTCTAGTTTTAGTCTAGACTACATCTACAGCCAGTTTAGTCAGCTAAAACCAAATGGGTTTAGTtacattgtaatgcatttattaaacagttttcgAACATTTCCAAACGaattatttttgacattaagGTTAAAACTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199938 lncRNA downstream 130889 1413803 ~ 1422222 (-) True G135339
TU199918 lncRNA downstream 265802 1287092 ~ 1287309 (-) True G135323
TU199887 lncRNA downstream 314951 1237960 ~ 1238160 (-) True G135297
TU199793 lncRNA downstream 423035 1127292 ~ 1130076 (-) True G135225
TU199862 lncRNA downstream 446007 1106777 ~ 1107104 (-) True G135277
TU199993 lncRNA upstream 91 1555268 ~ 1557577 (-) True G135368
TU200020 lncRNA upstream 34286 1589463 ~ 1591235 (-) True G135382
TU200032 lncRNA upstream 54371 1609548 ~ 1610205 (-) True G135384
TU200040 lncRNA upstream 74875 1630052 ~ 1630329 (-) True G135389
TU200041 lncRNA upstream 79415 1634592 ~ 1635272 (-) True G135390
XM_043219148.1 mRNA downstream 241456 1293218 ~ 1311655 (-) False tab2
XM_043219147.1 mRNA downstream 241456 1293218 ~ 1311655 (-) False tab2
XM_043219146.1 mRNA downstream 241456 1293218 ~ 1311655 (-) True tab2
XM_043219378.1 mRNA downstream 330096 1169796 ~ 1223015 (-) True lrfn2b
XM_043218923.1 mRNA upstream 3603 1558780 ~ 1571699 (-) False pcmt
XM_043218925.1 mRNA upstream 3603 1558780 ~ 1571698 (-) False pcmt
XM_043219143.1 mRNA upstream 38553 1593730 ~ 1610790 (-) False ankrd6b
XM_043219142.1 mRNA upstream 38553 1593730 ~ 1610789 (-) False ankrd6b
XM_043219139.1 mRNA upstream 38553 1593730 ~ 1610789 (-) False ankrd6b
XR_006247345.1 other downstream 53624 1499378 ~ 1499487 (-) True LOC122325606
XR_006247348.1 other downstream 55139 1497862 ~ 1497972 (-) True LOC122325609
XR_006247344.1 other downstream 56669 1496331 ~ 1496442 (-) True LOC122325605
XR_006247337.1 other downstream 58196 1494802 ~ 1494915 (-) True LOC122325596
unassigned_transcript_2245 other downstream 58775 1494265 ~ 1494336 (-) True trnag-ucc_26
TU199996 other upstream 3605 1558782 ~ 1571551 (-) True pcmt
TU200031 other upstream 100459 1655636 ~ 1660516 (-) False pnrc1
XR_006247211.1 other upstream 299085 1854262 ~ 1876292 (-) False myo6a
TU200217 other upstream 450372 2005549 ~ 2008962 (-) False G135527
XR_006247386.1 other upstream 465204 2020381 ~ 2020592 (-) True LOC122325649

Expression Profile