RNA id: TU199996


Basic Information

Item Value
RNA id TU199996
length 5111
RNA type TUCP
GC content 0.41
exon number 6
gene id pcmt
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1546487 ~ 1571699 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGGGCGGTGTGCGCAGGCGCGGCGCTGACAGCCGCACTCTACCTGATCCGCAGAGTGTGTTTAATAATGGCCTGGAAATCCGGAGGAGCGAGCCATGCGGAGCTCGTCAACAACCTCCGCAAAAATGGGATCATTAAATCAGACCGCGTGTATGAAGTTATGTTGGCCACAGACCGTGCCCACTTTTCCAGATGTAACCCGTACATGGACTCGCCACAATCTATAGGTTACCAAGCAACAATCAGTGCACCACATATGCACGCGTACGCCCTAGAGCTCCTCCATGATCACCTGTACGAAGGAGCCAAGGCTCTGGATGTGGGGTCCGGCTCCGGGATCCTGTCCGTCTGCTTTGCCAGAATGGTCGGGCCGAAGGGGAAGGTGATTGGCATTGATCATATAAAGGAGCTTGTGGAGGATTCTATAGCCAACGTAAAGAAAGACGACCCTAGtttgatctcttcaggaagaaTCAAGCTCATTGGTCGGTCTACTTACTAATTGTTTTTGcctgttttacattttgtgttttaaaatgtattcattatttaagTGTGCAGCACTATTCGGAGGATTTTAATCGGCCAGCGTTCAGTACTATATACGTATTATATTTCGTatatttaatccatttttttttctttgattttgtttaatgttGTGACGTTTGTGAGAAATTGTCTGTGTGTATGCAGTTGGAGATGGAAGGATGGGCTATACGGAAGAAGCACCTTATGACGCCATACATGTCGGAGCCGCAGCTCCCACGGTGCCACAAGCATTGCTGGACCAGCTAAAGCCAGGCGGGCGTCTGATTCTGCCGGTCGGGCCGGCGGGAGGGAACCAGATGCTGGAGCAGTATGACAAATTGGAGGACGGCAGTACCAAAATGAAGCCGCTGATGGGCGTGATTTACGTGCCTTTAACAGACAAAGACAAGCAGTGGTCAAGGTGGAAGTGACTTCCTGTCCTCTGTCCCCTCTCTCTTCTAGGGCACAGGTGAAACGGTGTGGTCCGGAGCAGACAGAGGCTGCATTTGCCgcgtgtcatttttttttttgctgctccATACCATGATGAACAACtgcacagtgtttttttttttttaacccaccAGCCTGATTtgaccaaacaaacaaaaaaaaatgtttgaaatttcTGGTTTGCCATTAACTGCTggaatggtttttattttttccctctaAAATGCTTTCTGAGTGATGAGACATGAAAGCATGAAGACGTCAAATCCTTTTTAGACTCGGCTTTGTTCACGCTGGCAGCCCAAATCTGACTCTTAAGGGTCGGTTCcagcaaaaatgtttcattcgCTTACGGCATCGTTTAAAACGACAAGAGGAGCTTAGAATCTGTTTCCAGGAACTGATACTTTCTgtattatataaagtaattGCGCAGCTATTTTTCCCTTTTAGATTTCCACCCTGTTAGACAGCTGCCATTGtgacatgtatgtgtgtatacgtgAATGTGTAAGATAATATGCTGCATCCAAACCGCTTTTGTAGAAGAAAGTATCTTGGCGTTGTGTAGACGCCTACGTCGTAACTGGAAACCGATATAAACGCACCAGATATGCAGTCCACTGTCTGAATCCTGTTTCATCAGTGGCAGACCGGTGcaatctgaaaaacaaattgCATGCAGTTTGAACAGTAAAGGgtcagttcacctaaaaatgaaaattagcccatAGTCTACTCATCCTCAAGGCGTCCtgggtgtatatgactttcttctttcagacgaatagACTTGTAGTGTATTAATCCGGTCATGGCTCGTAAAGCTTTATAATGGTGGTAATAAacgcttttctctctctctcttcccggTGTTGGTTGTACGCTGAAGCCGTTCCGTGTGTGCAGCGGACGCCTCTGAGATGCATTATTCTCCGCTCTACAGGAGCCGAGCAAAGCAAAGTTTCCTTACTTTAGAAAATGAAAACCATTCGCCTCTCGGCTTCTGTTGAAATCCTggcatttttctttacaaatcctcattttgtacttttaattatttaaaaaaaaaatttttgtacaTGCCCCAAGTCCTCAGACAGTTAGCAGAAGtatgaaaaaaagtgtgtaGAACATTaagttaaatgtgttttttaatgcaaagcaCATCAAGAGAGCCGTTATTCACCCCGGAGCCGTGAGAggcatcttttattttggatggatgcactttatttgacaaattttgtaaaaacactCCCCCGAGCCTGCAAGagccagaacatttttttttatataactccgATTGGGTTTGTCCGAGAGAAGAAAGTCACGGACTAGTCTCAGactaattgtaatttttggatgaacaaaCCCTCTAATGCCTTTAACATTGCTGGAACTAATTGTTGCATGCGTTTTGTTTATACTGTATGCAtgtcagtgatttttttttttttttttttggatcttgtttttgtgtctttgaggttcacaataacttttttttttctctctctgttttttttcttagggATGAACTTTGAAAGGATGATCTGGCAATACTCATCGCACCAcatgcgctcacacacacacacacacacacacacacacacacacacaatgcacatCCAAATGGACTTCACTGAGGAGAGCTTGTATAAATGCTCTATTTCCATACCTGCGACAGTCTGACGGTCTTGAAAGATGGATGTATCGATCggattcttttatttaaaaaggaaaaagcgGAATAGGGCTTCGTGCTGAGATTTTCCTGCCTGCAGTTTGAGGATtgtgtgaaatgcatttttttgttttttttggagggTGGGGGTTATTTGACGCAGGAGCAGATTTCTTGATGACTTCAGTATTACGGTCAGTTGGATTGTTCACACATCTCAGCGTGATGTCGGCCTTCGTGCTGAATCCAGTCTGtgattaaaacataattcaatGCTACATTATGTGTAGGGATGTCTTTGCTCTACAAATCTGTGTTAATAGTAATGGCTTGTGTTTTCAGCTGAAGCATGTGATGCCCAGATAAAATAAACCACTTAACATTCGATAAATTCGTTAGAGGATTCTATAGTAAGCCGCAGGAGGCCATGTTTTACAGTGATCTTACTGTGGTTATGGGATGCAGTTTCAATGGCTCGGTATGGGATAATGTACAGACAGCTGGCCGTTAGAACAAACCGATCCCTGACACCGAGCTTACCCACCGAATAAATAAGTTGCAAACCTTTTAATACGTGAGAAGGAGTGCAGAATGATATAAGAAATTGTTTATCTGTGATCAGCTATTCTCCTAGGCATAGTTAGAAGAGTGTGTACAAACCACAGGATGCTGCCGTCAACCAATCACAAGGTGTTTCACAGAACCCAGTATAATATTTGCTATTAGAGTAGCAATGATGGCAATACGATAAAAGACTCCAATGTTAAATAACTAGCTTTTCTGAAAAAAGGTCTATAACAATGTAATAATGCAAACAATTTCTCCAGGCAAGTAATATAATCAGTTAGCTATAACTTTAGGCTTTTTGCAGTTGCCAAGCAATTCAGCAACATAAATATAGACAGATggacacaggtgtgtgtgtgtgtgtgtttaggggtTTTTACAACAGGTATTTTGCAAAGAGTATCCGATACGCTaaattgccaaaagtattggaCCCCCCctttaataaacagttttgactattttagtaacaaaaatcttaatttttaagcatataatgatattggATTGTGCGCTTCTTATGTGCTAGCAACAGTTTGGATGGGACCCTTTCGtgttctaacatgacaatgcatCTGCGTCAAAGGCATTCATTCAGCGTGGAAGAACTTATTGGTCTTCAGAAACCATGCTAAACAGCTTTAAATGTGTGACTATAATCAGGACTATAACTCAAGAACAAATAGCTATGATACCATACATTATATGGTCAAAAGTATTGGGAtgtcaaaagaacagaaaaggaaaacaactgGCAACAGAAATGCTGACTTTGTAAAGCTTGTATTTCCATCTATTGCAACCATTTTGGAGGTGTCTAAAATAACTATAACCGTATGTACAAGTCACTGgtgttttagtttttggctCAAAGTCTGCATTTAAAGGCTTGCTTAGTTGAAGACGCATTATTTTCCAGAgattatcgtcgatttgatGCTATTTAAACCTGACTGAGCTGGACAATGATGTATCTGCATTCAATAATGAAAATTGAGTGGTCAATCTTAAACATTAATTCTATTCTTCTGTTTGATACTgtgcactatataaataaaggtgatttgATCTGTCcgaactgttgctataaaacaaaaagcacgtTCTTCCCTAGAATGTCATTATATTAGGATTTTGTACTTGTGGAGTAttcaaacctgttcattaggTGGAGGTGCCGCAATACTTTTGTGACGTATGCATTGAAATTTTAGAAATCAACTCCAGAATGCTAAAATAATGATGTTGTTCCAAACgcatattattttctttgttttgtgaaacACGACAGGTGCTTTTCCAAATGacgaaatgtaatgtttttaataaaaggtaTGTGTTAAATTCATAACCGTCGCCTTTAGATTTGATGTTGTGGAACCCAAACAATACCGGTTCTCGGCAACTATAATAAACACGAGATTTGAGAGCTACTGCGTCGTTTGGTGGAAGGGAAGGTCAAATCTAAAGCCTTGGCTTAGACAGAATGCATGAGTTGTGCGCATAGACTACTTTTATGGGACTTTCGTGTGCTTGGAGCAAAAAAATCATCCACTTTCTTTATTTGGAAAACAGAATCTTCAACATTTTTGCgtatttcacagaaaaataagaAGTTGGGTCGCGAGTTCAGAGCACAAGTGTAGCGATATTACTgctacactttttttgtgtttcacatcACTGCACTGCTCAAAATAAGCTTGTCTATATTATCTAACATGCAGCAAGTAAAGTCCCACTCAGACCACGCTAAACCTTCAGTGGTCACTTTGATTGTAAGCGGTTTTCAATGCCAATTctctgtgcatgtttgtgtgttacCTGCACGCACAAACGTGGCTTTTGACAAATAAACTCACTGCTAAGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199993 lncRNA downstream 1205 1555268 ~ 1557577 (-) True G135368
TU199988 lncRNA downstream 3605 1553111 ~ 1555177 (-) True G135365
TU199938 lncRNA downstream 136560 1413803 ~ 1422222 (-) True G135339
TU199918 lncRNA downstream 271473 1287092 ~ 1287309 (-) True G135323
TU199887 lncRNA downstream 320622 1237960 ~ 1238160 (-) True G135297
TU200020 lncRNA upstream 17912 1589463 ~ 1591235 (-) True G135382
TU200032 lncRNA upstream 37997 1609548 ~ 1610205 (-) True G135384
TU200040 lncRNA upstream 58501 1630052 ~ 1630329 (-) True G135389
TU200041 lncRNA upstream 63041 1634592 ~ 1635272 (-) True G135390
TU200043 lncRNA upstream 67993 1639544 ~ 1640129 (-) True G135392
XM_043219148.1 mRNA downstream 247127 1293218 ~ 1311655 (-) False tab2
XM_043219147.1 mRNA downstream 247127 1293218 ~ 1311655 (-) False tab2
XM_043219146.1 mRNA downstream 247127 1293218 ~ 1311655 (-) True tab2
XM_043219378.1 mRNA downstream 335767 1169796 ~ 1223015 (-) True lrfn2b
XM_043219143.1 mRNA upstream 22179 1593730 ~ 1610790 (-) False ankrd6b
XM_043219142.1 mRNA upstream 22179 1593730 ~ 1610789 (-) False ankrd6b
XM_043219139.1 mRNA upstream 22179 1593730 ~ 1610789 (-) False ankrd6b
XM_043219141.1 mRNA upstream 22179 1593730 ~ 1610787 (-) False ankrd6b
XM_043219138.1 mRNA upstream 22179 1593730 ~ 1610787 (-) False ankrd6b
XR_006247345.1 other downstream 59295 1499378 ~ 1499487 (-) True LOC122325606
XR_006247348.1 other downstream 60810 1497862 ~ 1497972 (-) True LOC122325609
XR_006247344.1 other downstream 62340 1496331 ~ 1496442 (-) True LOC122325605
XR_006247337.1 other downstream 63867 1494802 ~ 1494915 (-) True LOC122325596
unassigned_transcript_2245 other downstream 64446 1494265 ~ 1494336 (-) True trnag-ucc_26
TU200031 other upstream 84085 1655636 ~ 1660516 (-) False pnrc1
XR_006247211.1 other upstream 282711 1854262 ~ 1876292 (-) False myo6a
TU200217 other upstream 433998 2005549 ~ 2008962 (-) False G135527
XR_006247386.1 other upstream 448830 2020381 ~ 2020592 (-) True LOC122325649
XR_006247402.1 other upstream 450080 2021631 ~ 2021843 (-) True LOC122325666

Expression Profile