RNA id: XR_006247188.1


Basic Information

Item Value
RNA id XR_006247188.1
length 1038
RNA type transcript
GC content 0.54
exon number 9
gene id pcmt
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1546487 ~ 1571699 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAGAAATCCCAAACCCGAAAATGTGCACAAACGCTCTCCTGTGAGAGAAGCCCGCACGGGATGCTCGGCGCAGCGGTGAACCGATAACCGCGTTGCGGGACATGTCTGGTGACGTATCCGTGCTGGAAGTGGTGACGGTCGTCGGAAGGGCGGTGTGCGCAGGCGCGGCGCTGACAGCCGCACTCTACCTGATCCGCAGAGTGTGTTTAATAATGGCCTGGAAATCCGGAGGAGCGAGCCATGCGGAGCTCGTCAACAACCTCCGCAAAAATGGGATCATTAAATCAGACCGCGTGTATGAAGTTATGTTGGCCACAGACCGTGCCCACTTTTCCAGATGTAACCCGTACATGGACTCGCCACAATCTATAGGTTACCAAGCAACAATCAGTGCACCACATATGCACGCGTACGCCCTAGAGCTCCTCCATGATCACCTGTACGAAGGAGCCAAGGCTCTGGATGTGGGGTCCGGCTCCGGGATCCTGTCCGTCTGCTTTGCCAGAATGGTCGGGCCGAAGGGGAAGGTGATTGGCATTGATCATATAAAGGAGCTTGTGGAGGATTCTATAGCCAACGTAAAGAAAGACGACCCTAGtttgatctcttcaggaagaaTCAAGCTCATTGTTGGAGATGGAAGGATGGGCTATACGGAAGAAGCACCTTATGACGCCATACATGTCGGAGCCGCAGCTCCCACGGTGCCACAAGCATTGCTGGACCAGCTAAAGCCAGGCGGGCGTCTGATTCTGCCGGTCGGGCCGGCGGGAGGGAACCAGATGCTGGAGCAGTATGACAAATTGGAGGACGGCAGTACCAAAATGAAGCCGCTGATGGGCGTGATTTACGTGCCTTTAACAGACAAAGACAAGCAGTGGTCAAGGTGGAAGTGACTTCCTGTCCTCTGTCCCCTCTCTCTTCTAGGGCACAGggATGAACTTTGAAAGGATGATCTGGCAATACTCATCGCACCAcatgcgctcacacacacacacacacacacacgcacacacacacacacacacacacacac

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199938 lncRNA downstream 124265 1413803 ~ 1422222 (-) True G135339
TU199918 lncRNA downstream 259178 1287092 ~ 1287309 (-) True G135323
TU199887 lncRNA downstream 308327 1237960 ~ 1238160 (-) True G135297
TU199793 lncRNA downstream 416411 1127292 ~ 1130076 (-) True G135225
TU199862 lncRNA downstream 439383 1106777 ~ 1107104 (-) True G135277
TU200020 lncRNA upstream 17765 1589463 ~ 1591235 (-) True G135382
TU200032 lncRNA upstream 37850 1609548 ~ 1610205 (-) True G135384
TU200040 lncRNA upstream 58354 1630052 ~ 1630329 (-) True G135389
TU200041 lncRNA upstream 62894 1634592 ~ 1635272 (-) True G135390
TU200043 lncRNA upstream 67846 1639544 ~ 1640129 (-) True G135392
XM_043219148.1 mRNA downstream 234832 1293218 ~ 1311655 (-) False tab2
XM_043219147.1 mRNA downstream 234832 1293218 ~ 1311655 (-) False tab2
XM_043219146.1 mRNA downstream 234832 1293218 ~ 1311655 (-) True tab2
XM_043219378.1 mRNA downstream 323472 1169796 ~ 1223015 (-) True lrfn2b
XM_043219143.1 mRNA upstream 22032 1593730 ~ 1610790 (-) False ankrd6b
XM_043219142.1 mRNA upstream 22032 1593730 ~ 1610789 (-) False ankrd6b
XM_043219139.1 mRNA upstream 22032 1593730 ~ 1610789 (-) False ankrd6b
XM_043219141.1 mRNA upstream 22032 1593730 ~ 1610787 (-) False ankrd6b
XM_043219138.1 mRNA upstream 22032 1593730 ~ 1610787 (-) False ankrd6b
XR_006247345.1 other downstream 47000 1499378 ~ 1499487 (-) True LOC122325606
XR_006247348.1 other downstream 48515 1497862 ~ 1497972 (-) True LOC122325609
XR_006247344.1 other downstream 50045 1496331 ~ 1496442 (-) True LOC122325605
XR_006247337.1 other downstream 51572 1494802 ~ 1494915 (-) True LOC122325596
unassigned_transcript_2245 other downstream 52151 1494265 ~ 1494336 (-) True trnag-ucc_26
TU200031 other upstream 83938 1655636 ~ 1660516 (-) False pnrc1
XR_006247211.1 other upstream 282564 1854262 ~ 1876292 (-) False myo6a
TU200217 other upstream 433851 2005549 ~ 2008962 (-) False G135527
XR_006247386.1 other upstream 448683 2020381 ~ 2020592 (-) True LOC122325649
XR_006247402.1 other upstream 449933 2021631 ~ 2021843 (-) True LOC122325666

Expression Profile