RNA id: TU200029


Basic Information

Item Value
RNA id TU200029
length 1534
lncRNA type sense_over
GC content 0.48
exon number 3
gene id pnrc1
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1655096 ~ 1660536 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCACAGCCATTacgagaaaaagagaaaggtgATGTTTCTGCTCTGGAGCGCGTTATAAACGGATATTTTAATGGTGTTCTCGAAAACGGAGATTCGACTGAGAAAATCTCCTTGGCCGTCACCTTCCGAGCGAGCTCCAAACATCCGCCGCCATCGCCGTCGGTGTCTGTTTACGTCCGGACGCGTTTGATATAAAAAAGTTGTTTGGATAGTTAGGTTGATATCATGCTGGGCGATGCTTTTGGACATCGTGTTGAATCCAGCGTGGAGAATAAAGCAGCGAAGATAAACAGATCCAAACAAGCGCTCTTGAAGAAGAGAGGACGAAACGTTCACAGCAAACCCAACAAAGCGTCGGGAAACGTCaacaaaagcagctttaaacCTCCATTAAGCACCAATGAAGAGCTCAAACCAGCTCAGTCTAAACCAGCCACGAATAAACAGaTGAAAAAGATGCCGTTGCACATGTAAAAAGAACATTCCCCTCAGCTGAAGCTAAAAACCGAGAGTTTCGACCGAGGACTCCAGCCCGGCAGGCCGTCTGCCCACAGCTCGAGCCGTCTTGAGAAAACCACAGAGAGCCTGAGCAAACGGAGACAGTGGAGCAAGCAGAGAAACGTATCGGACGACACTCGTCTCCCTCAAAGACAGAAAACGCCCTCCCTGATGGGGAAGAGCCCAGCTGAGGGCCTCGGGAGGGTCGGCGCTTGCCCTCCTGAGCTCTCGCCGGAGTCTGAGAAGACGTACGCTGGAGCGAAGTTCAGCGAGCCTCCCTCGCCCAGCGTCCTCCCCAAGCCGCCCAGCCACTGGGTGGGAGAAGGGGCTCTTCAGACGGACGTACAGCAGCACCGCAGCAAAGAGCAGATGTCTGTGCACCTCAAAACCCTGCTGAAGGTCCGAGCCCAGCCCTGAACTTCAGAAAACAACACGGACTGACTGGTAACATCTCGTTCAAGAGCTATTCGGCTTCGTTAAAGcgttaaaatgaaattataaactGAGCCGGCCTTTCCAAACCCCAATGATTCACTTTCtcctgtggaacacaaaagacgaTGTTCTGGCGAATGTTAACGACCGCTttgacttgaaaaaaaaaatgtccacgGAAGAAAGAGAGTCATGACGGGTGGAGAACTGttaacatttttggatgaactacgCCTTTGAATAAGACGACATGCGGAAGTGAGAACACGGAGACgtttaatatgtgtatattttttcatgttagtTTACCTGGAAGAGTCAAGTTAGTTTTGTTACTGAAATGTAATCGGTATCATGATATTCACGTTCGTGTAACACCAGCGCGTGGAACGTTTTGCACAAGAATGAAAGTGTCTGAGATATTTCAGACAATGTCAACTCGTGGACAATCAGCGTGAAGAACTGGACCGCTAGCAGCAAGAGAGTggtgtttttcattttggtttGGGTTTTGACCTTACGTTGAAGCACTGTGGACTGTATTTCAAtagaataatttgtttttaattgtctgAAGAATGTAGTACTTTTGTATGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200043 lncRNA downstream 15507 1639544 ~ 1640129 (-) True G135392
TU200041 lncRNA downstream 20364 1634592 ~ 1635272 (-) True G135390
TU200040 lncRNA downstream 25307 1630052 ~ 1630329 (-) True G135389
TU200032 lncRNA downstream 45431 1609548 ~ 1610205 (-) True G135384
TU200020 lncRNA downstream 64401 1589463 ~ 1591235 (-) True G135382
TU200085 lncRNA upstream 84129 1744645 ~ 1744854 (-) True G135429
TU200086 lncRNA upstream 84843 1745359 ~ 1745656 (-) True G135430
TU200089 lncRNA upstream 89079 1749595 ~ 1749803 (-) True G135433
TU200090 lncRNA upstream 91640 1752156 ~ 1752456 (-) True G135434
TU200091 lncRNA upstream 92217 1752733 ~ 1752947 (-) True G135435
XM_043219143.1 mRNA downstream 44846 1593730 ~ 1610790 (-) False ankrd6b
XM_043219142.1 mRNA downstream 44847 1593730 ~ 1610789 (-) False ankrd6b
XM_043219139.1 mRNA downstream 44847 1593730 ~ 1610789 (-) False ankrd6b
XM_043219141.1 mRNA downstream 44849 1593730 ~ 1610787 (-) False ankrd6b
XM_043219138.1 mRNA downstream 44849 1593730 ~ 1610787 (-) False ankrd6b
XM_043219243.1 mRNA upstream 129520 1790036 ~ 1801963 (-) True nt5e
XM_043219245.1 mRNA upstream 147589 1808105 ~ 1819393 (-) True mei4
XM_043219246.1 mRNA upstream 147589 1808105 ~ 1818474 (-) False mei4
XM_043219244.1 mRNA upstream 147589 1808105 ~ 1818368 (-) False mei4
XM_043219219.1 mRNA upstream 179612 1840128 ~ 1876292 (-) False myo6a
XR_006247187.1 other downstream 83937 1546489 ~ 1571699 (-) False pcmt
XR_006247188.1 other downstream 83938 1546487 ~ 1571698 (-) False pcmt
TU199996 other downstream 84085 1558782 ~ 1571551 (-) True pcmt
XR_006247345.1 other downstream 156149 1499378 ~ 1499487 (-) True LOC122325606
XR_006247348.1 other downstream 157664 1497862 ~ 1497972 (-) True LOC122325609
XR_006247211.1 other upstream 193746 1854262 ~ 1876292 (-) False myo6a
TU200217 other upstream 345033 2005549 ~ 2008962 (-) False G135527
XR_006247386.1 other upstream 359865 2020381 ~ 2020592 (-) True LOC122325649
XR_006247402.1 other upstream 361115 2021631 ~ 2021843 (-) True LOC122325666
XR_006247394.1 other upstream 362360 2022876 ~ 2023087 (-) True LOC122325658

Expression Profile