RNA id: TU200032


Basic Information

Item Value
RNA id TU200032
length 634
lncRNA type intronic
GC content 0.37
exon number 2
gene id G135384
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1609548 ~ 1610205 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGAAATTGTATTCGCTTAACTGGTATTGGTCGACTTCCATCAGTGGCTTGTTCAGCTTGTTAATTGAAACACGTCTCAAAACACTGTGGCAAACAATTTTTAGTggttttaatgattaaaaagttTAGTTTGGTGCGGTTAGATTTTCTGTGatagtttgtttttgctttttttcttcatGGTTTCGGTTATGTCAGATTTGAGGTCTTCCTGGTACAATTACGACCCCGAAATATAacgaagcacacacacacacacagctttagTTTTGATCGACGCAGCCACAGACGTTAGCATGTAAAACCATTAGCTTTATTTACGAGCGCGAAACACACCAAAATAGCTAACGTTCGCTGTGAAACAAAACGCTGCACTTCCTGTAcgaaaataatatactttttcaCAGCTTGGTATTATCCACTAAGCCCACATATTTCCAAATACGATTTCTTTTAATTCACTTTACTGTAGGAACAATAACTAGCTGTGGTGTTTCTGTGAGGGGTTTCGGTAAATATATCAGCCAAGGTCAGAAATagtttaaagtgttaaaaaaaaaaaagcatctttatCAGATTTGTTTCTGTGGTTTGTCTCAAACCCATTTGTTTCTGTCTCGGATGAAGGGTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200020 lncRNA downstream 18313 1589463 ~ 1591235 (-) True G135382
TU199993 lncRNA downstream 51971 1555268 ~ 1557577 (-) True G135368
TU199988 lncRNA downstream 54371 1553111 ~ 1555177 (-) True G135365
TU199938 lncRNA downstream 187326 1413803 ~ 1422222 (-) True G135339
TU199918 lncRNA downstream 322239 1287092 ~ 1287309 (-) True G135323
TU200040 lncRNA upstream 19847 1630052 ~ 1630329 (-) True G135389
TU200041 lncRNA upstream 24387 1634592 ~ 1635272 (-) True G135390
TU200043 lncRNA upstream 29339 1639544 ~ 1640129 (-) True G135392
TU200029 lncRNA upstream 45431 1655636 ~ 1660516 (-) False pnrc1
TU200085 lncRNA upstream 134440 1744645 ~ 1744854 (-) True G135429
XM_043218923.1 mRNA downstream 37849 1558780 ~ 1571699 (-) False pcmt
XM_043218925.1 mRNA downstream 37850 1558780 ~ 1571698 (-) False pcmt
XM_043219148.1 mRNA downstream 297893 1293218 ~ 1311655 (-) False tab2
XM_043219147.1 mRNA downstream 297893 1293218 ~ 1311655 (-) False tab2
XM_043219146.1 mRNA downstream 297893 1293218 ~ 1311655 (-) True tab2
XM_043219051.1 mRNA upstream 44891 1655096 ~ 1660536 (-) False pnrc1
XM_043219050.1 mRNA upstream 44891 1655096 ~ 1660536 (-) True pnrc1
XM_043219243.1 mRNA upstream 179831 1790036 ~ 1801963 (-) True nt5e
XM_043219245.1 mRNA upstream 197900 1808105 ~ 1819393 (-) True mei4
XM_043219246.1 mRNA upstream 197900 1808105 ~ 1818474 (-) False mei4
XR_006247187.1 other downstream 37849 1546489 ~ 1571699 (-) False pcmt
XR_006247188.1 other downstream 37850 1546487 ~ 1571698 (-) False pcmt
TU199996 other downstream 37997 1558782 ~ 1571551 (-) True pcmt
XR_006247345.1 other downstream 110061 1499378 ~ 1499487 (-) True LOC122325606
XR_006247348.1 other downstream 111576 1497862 ~ 1497972 (-) True LOC122325609
TU200031 other upstream 45431 1655636 ~ 1660516 (-) False pnrc1
XR_006247211.1 other upstream 244057 1854262 ~ 1876292 (-) False myo6a
TU200217 other upstream 395344 2005549 ~ 2008962 (-) False G135527
XR_006247386.1 other upstream 410176 2020381 ~ 2020592 (-) True LOC122325649
XR_006247402.1 other upstream 411426 2021631 ~ 2021843 (-) True LOC122325666

Expression Profile