RNA id: TU200237



Basic Information


Item Value
RNA id TU200237
length 246
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G135542
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2099996 ~ 2100241 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGCAGCGAGCCAGCCCTGCGATGGGTACACCGGAACCAGATAAAGAGGCACCAGGGCTCCAAGAGACAAGGAAAGGGGGAAGACCAAACCCACTGACACAGACCGACTATCGCACCTCACTGATGTAATTCCTCACCCACTAGGGAAACACATAGCCAGGTTTTTAAACACAACACCTACACGCTCCTTCACCGCACTGCTAGAACCAACACTCTAGTAACAAGGAGCTTCCCCACACAGGTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200216 lncRNA downstream 86469 2005549 ~ 2013527 (-) True G135527
TU200155 lncRNA downstream 221874 1877914 ~ 1878122 (-) True G135480
TU200091 lncRNA downstream 347049 1752733 ~ 1752947 (-) True G135435
TU200090 lncRNA downstream 347540 1752156 ~ 1752456 (-) True G135434
TU200089 lncRNA downstream 350193 1749595 ~ 1749803 (-) True G135433
TU200241 lncRNA upstream 258237 2358478 ~ 2358691 (-) True G135546
TU200345 lncRNA upstream 476891 2577132 ~ 2577488 (-) True G135627
TU200347 lncRNA upstream 479028 2579269 ~ 2579702 (-) True G135629
TU200382 lncRNA upstream 543940 2644181 ~ 2647081 (-) True G135658
TU200419 lncRNA upstream 632362 2732603 ~ 2737889 (-) True G135674
XM_043218731.1 mRNA downstream 107817 1989485 ~ 1992179 (-) True si:dkey-121j17.6
XM_043218779.1 mRNA downstream 111780 1976324 ~ 1988216 (-) True smyd2b
XM_043220216.1 mRNA downstream 134699 1934537 ~ 1965297 (-) False kcnk2b
XM_043218927.1 mRNA upstream 267423 2367664 ~ 2378853 (-) True frk
XM_043218926.1 mRNA upstream 282940 2383181 ~ 2388664 (-) True col10a1b
XM_043218692.1 mRNA upstream 366142 2466383 ~ 2473993 (-) True gpr63
XM_043218646.1 mRNA upstream 374630 2474871 ~ 2478814 (-) False ndufaf4
XM_043218645.1 mRNA upstream 374630 2474871 ~ 2478814 (-) True ndufaf4
unassigned_transcript_2288 other downstream 2376 2097547 ~ 2097620 (-) True trnai-aau_83
unassigned_transcript_2287 other downstream 2534 2097390 ~ 2097462 (-) True trnaf-gaa_92
unassigned_transcript_2286 other downstream 3591 2096334 ~ 2096405 (-) True trnap-ugg_24
unassigned_transcript_2285 other downstream 3745 2096178 ~ 2096251 (-) True trnai-aau_82
unassigned_transcript_2284 other downstream 3904 2096020 ~ 2096092 (-) True trnaf-gaa_91
unassigned_transcript_2289 other upstream 9968 2110209 ~ 2110280 (-) True trnaq-cug_33
unassigned_transcript_2290 other upstream 10130 2110371 ~ 2110443 (-) True trnaf-gaa_93
unassigned_transcript_2291 other upstream 10289 2110530 ~ 2110603 (-) True trnai-aau_84
unassigned_transcript_2292 other upstream 10445 2110686 ~ 2110757 (-) True trnap-ugg_25
unassigned_transcript_2293 other upstream 11339 2111580 ~ 2111651 (-) True trnaq-cug_34

Expression Profile