RNA id: TU200382


Basic Information

Item Value
RNA id TU200382
length 2064
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G135658
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2644181 ~ 2647081 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCgttcacatttattttgcttttagtgTGCTCACATAAAATTTAGAACACCTTCAGCAGAGAAGTTCAATATCAATTCTGTAAGCAAAGTTACATTCAATCTAAGTCAAAGGTAAAAGCTTCTCcaatatttacaaaagaaagagacaagATGCTACACAAACATTGCATCTGATAGGTTCCTTATTTTTGTCAAACGACCACTGAAAAAGCATCAACTGTTGTAATCAAAAACCACAGTATAAACAGGAATATGTGTCACAGCTTGgtttgagttttaaaaaaaatgttccaatGGTCTGAGGATGACTTACAAAAAACAGACTTGGTGACAGAAGAGCTGCATGTGCTTCTTGAGATCAAGATATCATTTGTACAATAATCACAGTTAAAACACCCCTTCTATACATACTTACACTTTAATAAGCTCATAGAACCAGCAATACACAATAAAGAATATGCAAATTGTTTTCTCACTGAATTCACAGACTgttacaacaattttttttgaatTCCCAGGACctttaaaatagttgttttaaacTTATCATTGTAACTTTAATTGgcttgttattattaaaaaaaaaattgctttagtGTTGAAAGCTGTAGTGAATGAATTAATGGTCATTCTGTTTTGTACTACATGGCATAACGCTGAGTCATCAAGGTGCCAATATTTAAAAACCCTCATTCCCCAACCCTGCACCCCTCTTTGACCACTACACCAGCTGCCTTTAACCCACAGGGATGtctatacattttcataaatgtttacattgttttgtataaaaatgcaaaaataaaatggggaaaaaagttAATACTGATGCTGAAAAAATATGAGACAAATTCAAAATTTTCTGTATTATTCAATGTTGCCATGCTTTTATCGCTGCTCCAGGAATAGCCACAAAGGCAGAGTGAAATTTGGGGAGAGgggaaatgtataaaaaagtaaagactAAAAAGCTCTTTAGTTCTCCATTGTCTCATAACCTGGGACCACTCCACTGTACAACAGGAAAATATGCCTTGAttatctgttgttgtttttttttgttttttttcctctttctctgttGATCTACACTGTGCACATTACTCTGTGGTAGACTCTGCCTGGACCTCTGGACTGGATTCTGCTTCTTGAACAGCGGGAGCAGATTCCTCTGCTACAGGTGCTTCATCTTTAGAAGGAGCAGGCTCCGTCTCCGCTGCTGACTCTGCGGGTTTCTCCTCTTCTTTGGACTCCTCAGGGGCAGGACCGGCAGCCTCTGGCTCCTCCGCTGGTTTCTCCTCTGGTTTGGTTTCTGCCTCCTTCTCTTCTGACACACCTGCTTCAGTAGCTTCAGCCTCCTCAGTTTTAGCCTCATCACCACCTTCTCCATCCCCGGTCTCCTTCTTGGTTTTCTTAAAAGAGAAGCCACTCAATTTGAAGGACTTCTTAAAAGAGAAgcgcttcttcttcttcttaggCGTCTCATTGCTTGTGGATGGAGTTGCGCCATCCTCAGCTTTCGCCGGCTCCTCTTCAGTGGCTGCACTCACTTCTGCGTTCGCTTGATCTCCTTCCTCAGCCTGCTTTTCTGCCGGAGCTGCCTCTGCCTTCTCTCCTTCCTCAGCTGCTGCACTGCCATTAGCGTGAACCTCTTCTTTCTCCTCAGCAGCCGCTGGAGATGCATCTCCATTCACCTTCACGTGGCCATTTCCTGTCCGTTAGCTTTGGAGGGTGAAGCTGCAGCCTCTCCGGCGTTTTCTGCAGCCGTTTCTCCCTTTCCAGCTGTCTTAGAGAATTGCGCTCCCATGCTTTCGCTCCAACAAAGAGCTCAACAGATCCCaatacagaacaaagagcaACAAGACTCGTCCTTAGAATACAACACCTGGCCAACAAGCTCGCTTAACGTAGCGATCGAAACCAGTCTCGGAGAAGAAAATTGTAGGAAAAACCCTGGGGagtttaagtattttttttaaattcccaAATTTGTGCAAGTGACACTGTAGACAGCTCAGAAAATGGAGAAATTTCCCTGGTCACTAATAAGATGCGGAGTCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200347 lncRNA downstream 64479 2579269 ~ 2579702 (-) True G135629
TU200345 lncRNA downstream 66693 2577132 ~ 2577488 (-) True G135627
TU200241 lncRNA downstream 285490 2358478 ~ 2358691 (-) True G135546
TU200237 lncRNA downstream 543940 2099996 ~ 2100241 (-) True G135542
TU200216 lncRNA downstream 630654 2005549 ~ 2013527 (-) True G135527
TU200419 lncRNA upstream 85522 2732603 ~ 2737889 (-) True G135674
TU200443 lncRNA upstream 112016 2759097 ~ 2760884 (-) True G135691
TU200446 lncRNA upstream 112215 2759296 ~ 2760884 (-) False G135691
TU200565 lncRNA upstream 212186 2859267 ~ 3231374 (-) True G135781
TU200570 lncRNA upstream 219713 2866794 ~ 3238869 (-) False G135782
XM_043219999.1 mRNA downstream 12038 2596412 ~ 2632143 (-) True lama4
XM_043220512.1 mRNA downstream 49385 2584067 ~ 2594796 (-) True tube1
XM_043218891.1 mRNA downstream 93482 2538637 ~ 2550699 (-) True si:dkey-119m7.4
XM_043219034.1 mRNA downstream 111054 2480372 ~ 2533127 (-) False fynb
XM_043220179.1 mRNA upstream 16697 2663778 ~ 2670855 (-) True ndufaf7
XM_043220137.1 mRNA upstream 93471 2740552 ~ 2757430 (-) False cep170bb
XM_043220140.1 mRNA upstream 93471 2740552 ~ 2757430 (-) False cep170bb
XM_043220139.1 mRNA upstream 93471 2740552 ~ 2757430 (-) False cep170bb
XM_043220138.1 mRNA upstream 93471 2740552 ~ 2757430 (-) False cep170bb
TU200243 other downstream 279357 2364053 ~ 2364824 (-) True G135548
unassigned_transcript_2411 other downstream 479119 2164990 ~ 2165062 (-) True trnaf-gaa_118
unassigned_transcript_2410 other downstream 479282 2164828 ~ 2164899 (-) True trnaq-cug_70
unassigned_transcript_2409 other downstream 480176 2163934 ~ 2164005 (-) True trnap-ugg_55
unassigned_transcript_2408 other downstream 480642 2163468 ~ 2163539 (-) True trnaq-cug_69
XR_006247260.1 other upstream 95695 2742776 ~ 2757430 (-) False cep170bb
XR_006247261.1 other upstream 95700 2742781 ~ 2757430 (-) False cep170bb
XR_006247236.1 other upstream 995462 3642543 ~ 3870066 (-) False nrxn3b
XR_006247239.1 other upstream 995466 3642547 ~ 3870066 (-) False nrxn3b
XR_006247238.1 other upstream 995466 3642547 ~ 3870066 (-) False nrxn3b

Expression Profile