RNA id: XM_043220590.1


Basic Information

Item Value
RNA id XM_043220590.1
length 2245
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC122325550
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 3968763 ~ 3975258 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGCATTTGTTTCTCTCCTTCTTTTCTGTGATTGGATAATTTTAGTGACgtcttttctgttattatttgctgctgttttttattaggtttcttTATTGGTTCGCCTGACCATCTGGGAGGATCTGGATGTCCAATCAGGAGCCGCGATGCAGAATTTAAATGGAATTGGTGTGCATGTTTCGGAAGGGCGGTGGAGTTGTGGCTAGCTTCACCGTACCTCATTTGTGCTGTGGTTTTCTTTTGAGTACTGTAATCGAACAAACTGAGATGAGTTAATTTAATCGAGAGAAGAGGGAGTTAGTGATGTCACGTGACGTACATTTCCCCAACACGTAGGTGTACCTATGTTTAACTCACTAGTTTAGGAGCGGgtgctgtttgtgtatttatgtttcagctagggtagtttattatttgttttctttcttttcagttagGTTAGAGGAAAAGGGGGATTTCAGTtagtattgtatgttttgttaatttcttttatttagcaccgctcgtttctttttcttctctctgtttgtttccGTTTGTACAacctgtatatatgtatatatatattgactcaCTCACGATCAGATTGCTTTTGGCAAGAGCCAGTTAATAAAGCGAACCGCGAGGTTTGTAGTAAAAATCTcggattgttttggtttctttcttcttccccGTTCTCGGATGTTATTCAAAAGGTTTATTTCTCCCGGTTATGTGCGTCCTTATTTTCCCTAGACCATCACACCAATAGGGGGCGTAACATAaatgggggctcgtccgggatacaTGTCCATGTCCGGTTGCTTGGGAGGTCCTTCCTGTTTACTCTGAGGACGGTGTTGGATTGAATTGAAACGTGGATCGTGTTTGTTGGGCCTGGTGTTGTGGCTGCATCTTTGAATACTGTACCGGCCAAGATCAATGGGGAACGGTTTAGAGAAAAACGTGAGTGTTTTTATTGCCATAAAGTAGGTCATGTCATTGCTGACTGTATGGtattaaagagaaaatcaaATCCGGTTAAAACGCAGTCAGTAGGTCTTATCAAAACTTCTTTAGTACAGGCTGATTCAGGGTATGAACCATTTTTGTTAGATGGTTTTGTGTCTTTCAGTGGTCAACTTGAGGACCGAGTTGCAGTGAGAGTGTTGAGGGACACTGGTGCTGCTCGCTCGTTGATACGCGGTGATGTTTTGCCTTTCTCCAAGGAGTCTGGTTTGGATTCCAGCATTTTAGTGCAAGCAGAATTGACTCAGAGATTTCCAGAAGTTTTCCCAGCGTGTGTCCTGACTCGGTCTCAGACGAAGAGGATGGGAACGGAGTTTACACTAGATGACACCTTCATGTGCACTGATCATCCAGTTCAAGTTGATGTGGAGTCTGTCAGTGTCAAAGAGCATCCATGCCAGGAGTCAGAATCAGAACAGAGGTGGATGCTAGTGCCGTTGGAGCTGGTGCTGTGCTCTTACAGGAAGATAAAGAAGCATTTCGAAGTTTATGTGGGGTCTACCCCATATCAAGTGATAGTGTATACAGATCACAATCCCCTTACCTTCTTGTGTCGAATGTACAACCACAATCAGCGGCTTATGCGTTGGGCTTTAATTGTCCAAGATTACAACCTGGAAATTCGGCACAAGAGAGGCACAGATAACGTGGTAGCTGATGCTCTTTCTAGAGTTTAACAAgtttcttTATTGGTTCGCCTGACCATCTGGGAGGATCTGGATGTCCAATCAGGAGCCGCGATGCAGAATTTAAATGGAATTGGTGTGCATGTTTCGGAAGGGCGGTGGAGTTGTGGCTAGCTTCACCGTACCTCATTTGTGCTGTGGTTTTCTTTTGAGTACTGTAATCGAACAAACTGAGATGAGTTAATTTAATCGAGAGAAGAGGGAGTTAGTGATGTCACGTGACGTACATTTCCCCAACACGTAGGTGTACCTATGTTTAACTCACTAGTTTAGGAGCGGgtgctgtttgtgtatttatgtttcagctagggtagtttattatttgttttctttcttttcagttagGTTAGAGGAAAAGGGGGATTTCAGTtagtattgtatgttttgttaatttcttttatttagcaccgctcgtttctttttcttctctctgtttgtttccGTTTGTACAacctgtatatatgtatatatatattgactcaCTCACGATCAGATTGCTTTTGGCAAGAGCCAGTTAATAAAGCGAACCGCGAGGTTTGTAGTAAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200720 lncRNA downstream 71276 3897202 ~ 3897582 (-) True G135901
TU200591 lncRNA downstream 441801 3120341 ~ 3527057 (-) True G135800
TU200614 lncRNA downstream 581329 3387192 ~ 3387529 (-) True G135819
TU200570 lncRNA downstream 729989 2866794 ~ 3238869 (-) False G135782
TU200730 lncRNA upstream 14600 3989857 ~ 3990072 (-) True G135910
TU200737 lncRNA upstream 29580 4004837 ~ 4006307 (-) True G135916
TU200739 lncRNA upstream 31298 4006555 ~ 4007352 (-) True G135918
TU200830 lncRNA upstream 65166 4040423 ~ 4040768 (-) True G135970
TU200833 lncRNA upstream 67371 4042628 ~ 4042996 (-) True G135971
XM_043219661.1 mRNA downstream 98792 3638289 ~ 3870066 (-) True nrxn3b
XM_043219499.1 mRNA upstream 589099 4564356 ~ 4582097 (-) True LOC122324820
XM_043219068.1 mRNA upstream 693422 4668679 ~ 4674148 (-) False tmem242
XM_043219067.1 mRNA upstream 693422 4668679 ~ 4674148 (-) True tmem242
XM_043219065.1 mRNA upstream 720257 4695514 ~ 4705308 (-) False lgals8a
XM_043219064.1 mRNA upstream 720257 4695514 ~ 4705308 (-) False lgals8a
XR_006247236.1 other downstream 98792 3642543 ~ 3870066 (-) False nrxn3b
unassigned_transcript_2442 other upstream 323226 4298483 ~ 4298555 (-) True trnat-ugu_51
unassigned_transcript_2443 other upstream 474126 4449383 ~ 4449455 (-) True trnat-ugu_52
TU200901 other upstream 589128 4564385 ~ 4573002 (-) False LOC122324820
TU201127 other upstream 1036219 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU201117 other upstream 1049549 5024806 ~ 5029532 (-) False selenol

Expression Profile