RNA id: TU200830


Basic Information

Item Value
RNA id TU200830
length 238
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G135970
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 4040423 ~ 4040768 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAAAAGTAGGTATATGCCCCAGCAGAAAATGTCTCTTGGAGGTCCGggtatatgatcatatttctggtgaacataatgaatatacagaCAATATGCAAGGAAGGCAGAGAAAACAGCAGCAAGCAGGTAAAACATCACATATAAGACCCATTCTGAGATCATGGCGGTGCTGTAGAGCAGCTCAGTGTGTAAAGTACTTCTACCTTCCTCCAGTCAAATTATAAGTCTCTTTTTAC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00053 Ascorbate and aldarate metabolism
ko00140 Steroid hormone biosynthesis
ko00830 Retinol metabolism
ko00860 Porphyrin and chlorophyll metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200739 lncRNA downstream 33071 4006555 ~ 4007352 (-) True G135918
TU200737 lncRNA downstream 34116 4004837 ~ 4006307 (-) True G135916
TU200730 lncRNA downstream 50351 3989857 ~ 3990072 (-) True G135910
TU200727 lncRNA downstream 65165 3968763 ~ 3975258 (-) False LOC122325550
TU200720 lncRNA downstream 142841 3897202 ~ 3897582 (-) True G135901
TU200833 lncRNA upstream 1860 4042628 ~ 4042996 (-) True G135971
TU200835 lncRNA upstream 5783 4046551 ~ 4229034 (-) True G135972
TU200837 lncRNA upstream 43196 4083964 ~ 4084334 (-) True G135974
TU200839 lncRNA upstream 58167 4098935 ~ 4435991 (-) True G135975
TU200842 lncRNA upstream 225756 4266524 ~ 4267579 (-) True G135978
XM_043220591.1 mRNA downstream 65166 3968858 ~ 3975257 (-) False LOC122325550
XM_043220590.1 mRNA downstream 65166 3968858 ~ 3975257 (-) True LOC122325550
XM_043219679.1 mRNA downstream 170357 3642540 ~ 3870066 (-) False nrxn3b
XM_043219499.1 mRNA upstream 523588 4564356 ~ 4582097 (-) True LOC122324820
XM_043219068.1 mRNA upstream 627911 4668679 ~ 4674148 (-) False tmem242
XM_043219067.1 mRNA upstream 627911 4668679 ~ 4674148 (-) True tmem242
XM_043219065.1 mRNA upstream 654746 4695514 ~ 4705308 (-) False lgals8a
XM_043219064.1 mRNA upstream 654746 4695514 ~ 4705308 (-) False lgals8a
XR_006247236.1 other downstream 170357 3642543 ~ 3870066 (-) False nrxn3b
unassigned_transcript_2442 other upstream 257715 4298483 ~ 4298555 (-) True trnat-ugu_51
unassigned_transcript_2443 other upstream 408615 4449383 ~ 4449455 (-) True trnat-ugu_52
TU200901 other upstream 523617 4564385 ~ 4573002 (-) False LOC122324820
TU201127 other upstream 970708 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU201117 other upstream 984038 5024806 ~ 5029532 (-) False selenol

Expression Profile