RNA id: TU200839


Basic Information

Item Value
RNA id TU200839
length 378
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G135975
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 4098935 ~ 4435991 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATCAAGTTTGTGCTGTATCATACATGCTGATCTATGGAAACCAGTGTTCGACTGAAATCTTAAAACTGAACCTTTAATGTCTCGGGACAGGTTGAGAGCCACATACCTGCTGTTTTGAGGATGTGTGAGAGAATGTCTTGGGGGATGTCTTCTCCATTTTCAAttgctgtctttctctcttgtaTCCATTTCTCTCCTGTTTTACGCAGGAGTTCAACTGCATCCTTAATTTTTTGAATGGTCTTCCAATTCTTGGGCAttagcGCAAAGAATGGGTCTCTGACATCTAACACCATGCCCCCTTAAACACAGTTCAACTGCATTCTGGAAAGGACTTTCAGTGAGcttcaaaaaatttaaatcaacacCAAAAGCC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200837 lncRNA downstream 14601 4083964 ~ 4084334 (-) True G135974
TU200833 lncRNA downstream 55939 4042628 ~ 4042996 (-) True G135971
TU200830 lncRNA downstream 58167 4040423 ~ 4040768 (-) True G135970
TU200739 lncRNA downstream 91583 4006555 ~ 4007352 (-) True G135918
TU200737 lncRNA downstream 92628 4004837 ~ 4006307 (-) True G135916
TU200890 lncRNA upstream 9782 4445773 ~ 4446203 (-) True G136012
TU200965 lncRNA upstream 300558 4736549 ~ 4736806 (-) True G136069
TU201129 lncRNA upstream 582370 5018361 ~ 5018714 (-) False G136175
TU201132 lncRNA upstream 582370 5018361 ~ 5018866 (-) True G136175
TU201134 lncRNA upstream 597608 5033599 ~ 5033804 (-) True G136176
XM_043220591.1 mRNA downstream 123678 3968858 ~ 3975257 (-) False LOC122325550
XM_043220590.1 mRNA downstream 123678 3968858 ~ 3975257 (-) True LOC122325550
XM_043219679.1 mRNA downstream 228869 3642540 ~ 3870066 (-) False nrxn3b
XM_043219499.1 mRNA upstream 128365 4564356 ~ 4582097 (-) True LOC122324820
XM_043219068.1 mRNA upstream 232688 4668679 ~ 4674148 (-) False tmem242
XM_043219067.1 mRNA upstream 232688 4668679 ~ 4674148 (-) True tmem242
XM_043219065.1 mRNA upstream 259523 4695514 ~ 4705308 (-) False lgals8a
XM_043219064.1 mRNA upstream 259523 4695514 ~ 4705308 (-) False lgals8a
XR_006247236.1 other downstream 228869 3642543 ~ 3870066 (-) False nrxn3b
unassigned_transcript_2443 other upstream 13392 4449383 ~ 4449455 (-) True trnat-ugu_52
TU200901 other upstream 128394 4564385 ~ 4573002 (-) False LOC122324820
TU201127 other upstream 575485 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU201117 other upstream 588815 5024806 ~ 5029532 (-) False selenol
TU201118 other upstream 588815 5024806 ~ 5029532 (-) False selenol

Expression Profile