RNA id: TU200844


Basic Information

Item Value
RNA id TU200844
length 315
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G135980
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 4271296 ~ 4271689 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agttgcaGAATTTATTGCAGACTTTTCTCCATTCAAATTGACAAGATCTGTACTTGTCTTACTAGAAAGAGCAGCCATGGGCCAGTACCATGATGGCTAGAGAATGATCCAATACTCACAGCAACAGAGCAGCCGCCTGGGATTTTCATCCCATTTATAACCATGTCCTCGTGGAGCCAGCGATTGGTTCCTGGAGCAGTTGGGTACAGACGCAGCGTTTCCTTCAACACCTGCGACAAGTAAGTGAATTTTCCAAGATCTTCATATGAAATGTCTCTTTTGTCCCAAGGACTTCATCCACCTCTGCTTTAGCTC

Function

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016782 transferase activity, transferring sulfur-containing groups molecular_function
GO:0004064 arylesterase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200842 lncRNA downstream 3717 4266524 ~ 4267579 (-) True G135978
TU200835 lncRNA downstream 42262 4046551 ~ 4229034 (-) True G135972
TU200837 lncRNA downstream 186962 4083964 ~ 4084334 (-) True G135974
TU200833 lncRNA downstream 228300 4042628 ~ 4042996 (-) True G135971
TU200830 lncRNA downstream 230528 4040423 ~ 4040768 (-) True G135970
TU200890 lncRNA upstream 174084 4445773 ~ 4446203 (-) True G136012
TU200965 lncRNA upstream 464860 4736549 ~ 4736806 (-) True G136069
TU201129 lncRNA upstream 746672 5018361 ~ 5018714 (-) False G136175
TU201132 lncRNA upstream 746672 5018361 ~ 5018866 (-) True G136175
TU201134 lncRNA upstream 761910 5033599 ~ 5033804 (-) True G136176
XM_043220591.1 mRNA downstream 296039 3968858 ~ 3975257 (-) False LOC122325550
XM_043220590.1 mRNA downstream 296039 3968858 ~ 3975257 (-) True LOC122325550
XM_043219679.1 mRNA downstream 401230 3642540 ~ 3870066 (-) False nrxn3b
XM_043219499.1 mRNA upstream 292667 4564356 ~ 4582097 (-) True LOC122324820
XM_043219068.1 mRNA upstream 396990 4668679 ~ 4674148 (-) False tmem242
XM_043219067.1 mRNA upstream 396990 4668679 ~ 4674148 (-) True tmem242
XM_043219065.1 mRNA upstream 423825 4695514 ~ 4705308 (-) False lgals8a
XM_043219064.1 mRNA upstream 423825 4695514 ~ 4705308 (-) False lgals8a
XR_006247236.1 other downstream 401230 3642543 ~ 3870066 (-) False nrxn3b
unassigned_transcript_2442 other upstream 26794 4298483 ~ 4298555 (-) True trnat-ugu_51
unassigned_transcript_2443 other upstream 177694 4449383 ~ 4449455 (-) True trnat-ugu_52
TU200901 other upstream 292696 4564385 ~ 4573002 (-) False LOC122324820
TU201127 other upstream 739787 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU201117 other upstream 753117 5024806 ~ 5029532 (-) False selenol

Expression Profile