RNA id: TU200890


Basic Information

Item Value
RNA id TU200890
length 361
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G136012
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 4445773 ~ 4446203 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGTATCATACATGCTGATCTATGGAAACCAGTGTTCGACTGAAATCTTAAAACTGAACCTTTAATGTCTCGGGACAGGTTGAGAGCCACATACCTGCTGTTTTGAGGATGTGTGAGAGAATGTCTTGGGGGATGTCTTCTCCATTTTCAAttgctgtctttctctcttgtaTCCATTTCTCTCCTGTTTTACGCAGGAGTTCAGCTGCGTCCTTAATTTTTTGAATGGTCTTCCAATTCTTGGGCTTACCGCAAAGAATGGGTCTCTGACATCTAACACCATGCCCCTTAAACACAGTTCAACTGCATCCTGGAAAGGACTTTCAGTGAGcttcaaaaaatttaaatcaacacCAAAAG

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0008146 sulfotransferase activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016782 transferase activity, transferring sulfur-containing groups molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0004104 cholinesterase activity molecular_function

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200839 lncRNA downstream 9782 4098935 ~ 4435991 (-) True G135975
TU200844 lncRNA downstream 174084 4271296 ~ 4271689 (-) True G135980
TU200842 lncRNA downstream 178194 4266524 ~ 4267579 (-) True G135978
TU200835 lncRNA downstream 216739 4046551 ~ 4229034 (-) True G135972
TU200837 lncRNA downstream 361439 4083964 ~ 4084334 (-) True G135974
TU200965 lncRNA upstream 290346 4736549 ~ 4736806 (-) True G136069
TU201129 lncRNA upstream 572158 5018361 ~ 5018714 (-) False G136175
TU201132 lncRNA upstream 572158 5018361 ~ 5018866 (-) True G136175
TU201134 lncRNA upstream 587396 5033599 ~ 5033804 (-) True G136176
TU201141 lncRNA upstream 645097 5091300 ~ 5097061 (-) True G136180
XM_043220591.1 mRNA downstream 470516 3968858 ~ 3975257 (-) False LOC122325550
XM_043220590.1 mRNA downstream 470516 3968858 ~ 3975257 (-) True LOC122325550
XM_043219679.1 mRNA downstream 575707 3642540 ~ 3870066 (-) False nrxn3b
XM_043219499.1 mRNA upstream 118153 4564356 ~ 4582097 (-) True LOC122324820
XM_043219068.1 mRNA upstream 222476 4668679 ~ 4674148 (-) False tmem242
XM_043219067.1 mRNA upstream 222476 4668679 ~ 4674148 (-) True tmem242
XM_043219065.1 mRNA upstream 249311 4695514 ~ 4705308 (-) False lgals8a
XM_043219064.1 mRNA upstream 249311 4695514 ~ 4705308 (-) False lgals8a
unassigned_transcript_2442 other downstream 147218 4298483 ~ 4298555 (-) True trnat-ugu_51
XR_006247236.1 other downstream 575707 3642543 ~ 3870066 (-) False nrxn3b
unassigned_transcript_2443 other upstream 3180 4449383 ~ 4449455 (-) True trnat-ugu_52
TU200901 other upstream 118182 4564385 ~ 4573002 (-) False LOC122324820
TU201127 other upstream 565273 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU201117 other upstream 578603 5024806 ~ 5029532 (-) False selenol
TU201118 other upstream 578603 5024806 ~ 5029532 (-) False selenol

Expression Profile