RNA id: XM_043219177.1


Basic Information

Item Value
RNA id XM_043219177.1
length 1176
RNA type mRNA
GC content 0.47
exon number 9
gene id selenol
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5024806 ~ 5029567 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACTTGCTTGATGACAGCTGATCAGCGCAGTTACGAGTAACTCACTGGAAGCTCAGCATGGCTACCGAAGTGGGCCAAAACACGGTCACAGAGGCTTTGAAAGAACTGGTCGGATTCGGTAGAGCATCTTTGGAGAATGTAGAAAAGGACATCGCCAGAGGTGGTTCTTTGCGAGACATCGTGGAGACAAAAGTTCGTCCTTTATTTGGTCTGATGTCAGCAGGTGCCAAGTTCTTCAACAcCCTGGGAGTGAAAAACCAAAAGGAAGCAGAAtatttgtgggaacagtttttTCAAAACACTGATGTTCGAGATAATGTTGAAGGCTTACTACAACTGGAAgtggaGTGGGATTGTTTTTTGAAGCGTCTGGACGTTCAGATGAAAATGAGCGACACGGTTCTTTCCCAGTGTCCTGCAGCCCAGACGCTCAGCTCAGATACGCAGCTTATACACGTCCAGACTAAAGAGAACGTGTCTCTGGGTCAGTACTTTGGGAAGGGAGAGAATCTCCTCCTTGTGTTGCTCCGCCATTTTGGATGACAGCCATGACGAGACCACCTGACTGAGCTGAAGAACAGCCAGAAGCTTCAGGGAGCGCAGTCCTTGCGGGTGCTGGTGGTCTCGTACGGCTCTCTTGAAGGGGCCGCGTTCTGGCTCGATCAGACAGGCTATGAGTTTGACATGCTGTTGGATGCAGAGAGAGCGGTGTATCGAGCGTTTGGTCTGGGCTCATCGATCAGCAAGGTGATGAAGTTTAAGTTAATGCTGCACTACTCTGAAATACTGACGATGAACCAACGGCTCCCCGATGTGCCACCTCAGTTCATCGATGACCTCTTTCAGGTTGGCTCCTCAGATAGACAGCTCCCCCAGAGGTTGTATGAATGAAGATCTGACTCAAAGTCATACGCTTATGAAGAGTCATTTCTGATGGGCATTTACACCCTCTGGTCATCACAGCTTCACATCTGTTGAGTTACACCAGCCCAGACCCGTCTATATCGCACATCAGTGTCTCGATTAAATGAAGTGAGATTATTAACTTAATTGTTTGCAGATACATTTTGCAATTATTCAAGACACACGAAATGTGTGTCAAGCCGTTTAACCATTGTTTACTGTGAATGATTATTGAAATCAACACCGAATAAAGAGCTGGATGTTGGTCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201132 lncRNA downstream 5940 5018361 ~ 5018866 (-) True G136175
TU201129 lncRNA downstream 6092 5018361 ~ 5018714 (-) False G136175
TU200965 lncRNA downstream 288000 4736549 ~ 4736806 (-) True G136069
TU200890 lncRNA downstream 578603 4445773 ~ 4446203 (-) True G136012
TU200839 lncRNA downstream 588815 4098935 ~ 4435991 (-) True G135975
TU201134 lncRNA upstream 4032 5033599 ~ 5033804 (-) True G136176
TU201141 lncRNA upstream 61733 5091300 ~ 5097061 (-) True G136180
TU201152 lncRNA upstream 82606 5112173 ~ 5119766 (-) True G136188
TU201376 lncRNA upstream 622732 5652299 ~ 5652925 (-) True G136350
TU201394 lncRNA upstream 671614 5701181 ~ 5701475 (-) True G136356
XM_043220156.1 mRNA downstream 12226 5011381 ~ 5012580 (-) True si:ch73-111k22.3
XM_043219514.1 mRNA downstream 14247 4973048 ~ 5010559 (-) True LOC122324828
XM_043219769.1 mRNA downstream 58025 4928862 ~ 4966781 (-) True LOC122324969
XM_043219770.1 mRNA downstream 58025 4928863 ~ 4966781 (-) False LOC122324969
XM_043219772.1 mRNA downstream 96646 4917807 ~ 4928160 (-) True LOC122324970
XM_043220269.1 mRNA upstream 4782 5034349 ~ 5052435 (-) False ttc13
XM_043220268.1 mRNA upstream 4782 5034349 ~ 5052435 (-) False ttc13
XM_043220267.1 mRNA upstream 4782 5034349 ~ 5052435 (-) True ttc13
XM_043220233.1 mRNA upstream 31140 5060707 ~ 5064427 (-) True fam89a
XM_043219356.1 mRNA upstream 37048 5066615 ~ 5072155 (-) True sprtn
TU201127 other downstream 12365 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU200901 other downstream 451804 4564385 ~ 4573002 (-) False LOC122324820
unassigned_transcript_2443 other downstream 575351 4449383 ~ 4449455 (-) True trnat-ugu_52
unassigned_transcript_2442 other downstream 726251 4298483 ~ 4298555 (-) True trnat-ugu_51
XR_006247237.1 other downstream 1154740 3642547 ~ 3870066 (-) False nrxn3b
TU201137 other upstream 140958 5170525 ~ 5284548 (-) False LOC122324433
unassigned_transcript_2445 other upstream 512710 5542277 ~ 5542388 (-) True trnal-caa_1
unassigned_transcript_2446 other upstream 513723 5543290 ~ 5543401 (-) True trnal-caa_2
unassigned_transcript_2447 other upstream 514739 5544306 ~ 5544417 (-) True trnal-caa_3
unassigned_transcript_2448 other upstream 515755 5545322 ~ 5545433 (-) True trnal-caa_4

Expression Profile