RNA id: TU201909


Basic Information

Item Value
RNA id TU201909
length 2391
lncRNA type inter_gene
GC content 0.36
exon number 5
gene id LOC122324389
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7133748 ~ 7139291 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taaacattgtattttagaTGAAATCTTTATGGTCTTTTCTCAGTTTGTTTGTTGTCTTGTAATCTCAGAAACATCACGAGGAGAATCCACGTCTTATAAGACATGAACGTTTTTGCCAATAAGGTGAGATACAGAGAAAACACGCTTTCTTGTTTATCGTCAGAGACTATATATTGTAGACTTAATAAAAGCGGTCTGTAGGTCGTTCACTTAATGTGACTCAAAAGTaacaaagttttgttttaaaaacccCTGCAACCTTTGGATGATCGTGGAGGCTGGTAAACAGACCTGAACCTTTCATGAGATGATTTTAAAGTTCagGTCAGAAAAAAACCAGCTGCTTTTAGGTTGTTAACTAAACTCATAATTAACACTATTGTACTTTTTGTACTGAAACAACGAACTGCAGCACTGGAGGAAATCAGCCTGAACAGGCCTTGGGAGCATCTTCATTTTTAAGGTAGGAAGAAGAAGCCGTGTTTTTAGGCTCTTAGTGGAAAACTAATGAACTAATGAacactgttgtgtttttttcacgTTGAAATACCAAACTAACATTTGAATGAAACCGGACGGAAACTTTGGGAGGATTTTCAGTTTCAGGCAAGAAAAAcaacctctttttttattagaagCGAACCGATaattaaatgactaataatcaaataataactgacacatttgctctttttatttgtatttatacgaCAAACTTCAACACTGGAGATAAAAGGCCCGAAGCACTGaatgattttcagttttaaggAAATCCCACCGATCTGAGGTTATTAGTACACTGGAAAAAGAGATTTGATGCTGAAGGAAATACTACAAGTGTATCTTCTACACTAAATCATTTACTTCAGAGGTGAACCAGAGAAAACCGGTGTGGGTTTTGTCCACTTCATATGTCTTGCATCACAGAAACATTACGAGAGAAATCAGCCTCTTATATACCAATACGtgtactgTAAATGAACCAGATGGAGTTCTGCTCAGTTGGATCCTGTCATAAGAACGTCCCTCTCTGAATGAAAGCAGACTCACTCAGAGGAGCAGGGTTACGCTGAGGACGCGCTCAACCGGCCTTCAGTACCACACAGACATTGAGACCTTTGTTGCTCAAGACAAAAGCGTATCTATCAGTGAGGGAGCACAGCTCTGCCCACACAACACAACCCACAGGCTTCAGAGAGCTTCAGGAGTCCAACGCAAGCACTTTCACAGCGCTTCGGGATCTGCAAGCTGCTATAATAAAACACGATATTCATAAACTCACTAAAAAGTCAGAAAAACAAGCTCAGGAGAAACGATGGCAGGGAGAAAATACTGTATGAAAGGGAGAGTTTTGAatgttgccaaaaaaaaataaaaaatccacaTTTGGATTTCCATGACAATccaaaagaggaaaaataattcaaatgaacttAACTAGTCTTCTGTAATTCTAGCGTATAACACAAATGTATAGTGATATAAATgtctaattataaatgtaaaatacactAACAGTTCAAATATACTTAAAGTGAACTAaaccaacatttttattactttaaatgtaacctgaaaataaatataatattaaatgtaaatgtaaatattaaaataacgcAACTAAACACTATTTAAGTCACATAAGATATAATACTGTAGTATTTTATTCACGTTAAAcgcaaaatggtaaaaaaaattacatttctttaaaaaaaaaattaaataaaattttaatgattCAGTGTAAACAACAAGACAACTATCAAGCATTACCAgtacattaaatacaattttctgtGTTAAATATGTGTCTCTGTATTGATGCACGTCCATCAAAAGGTTCATAATACTTTATACATTACATACCgtcaattaaaaacacacacacacacacacaaatagaaaTGTTCTGCGTAATCATGTTAGAGTTGTTCCATTTCTAGAAGAATTAATTTTTGGTCTGAGGCTAAAGAACTGGCTCATCTCCTCATTAGCACCATGATCAGTATTTATAGTCTCACCGGCCCAGGATCAGCGCATTAAGGCAGTCAAAGACTCAAGTTAATATTCAAAATCAGATCCTGAACACGTCCCTGTGGTAACAAGTGCTTTAAAGAATACACGTGACACAATTATGACTAACTCTGCTTGTGATTAAGTGCTAGTCACAAGAGCAGGGACGTGCACAGTGTCCAGCTCATTGGTCAACTGTACTTGAGTACTGGTAGCGTCGGGCCGGTCGGTCTGCGGATCCTCGTCTTCATCATCCCGATGCTCTTCAAACAGGTGCTCTGCCTCTTCAGAGAGCCGCGtatcttcatctctctcttccttctgtcaaataaaaaacacatttacattaataaaaaaaaaaaaaaaaaaaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201900 lncRNA downstream 3163 7127213 ~ 7130585 (-) True G136689
TU201648 lncRNA downstream 735638 6383432 ~ 6398110 (-) True G136506
TU201576 lncRNA downstream 855684 6274754 ~ 6278064 (-) False G136460
TU201549 lncRNA downstream 886857 6246263 ~ 6246891 (-) True G136440
TU201506 lncRNA downstream 928310 6205090 ~ 6205438 (-) True G136416
TU201911 lncRNA upstream 12099 7151390 ~ 7151754 (-) True G136694
TU201914 lncRNA upstream 13177 7152468 ~ 7251872 (-) True G136696
TU201950 lncRNA upstream 142081 7281372 ~ 7281804 (-) True G136716
TU201952 lncRNA upstream 221576 7360867 ~ 7396292 (-) False G136717
TU201951 lncRNA upstream 254735 7394026 ~ 7396292 (-) True G136717
XM_043220372.1 mRNA downstream 9065 7121351 ~ 7124683 (-) False LOC122325354
XM_043220371.1 mRNA downstream 9065 7121351 ~ 7124683 (-) True LOC122325354
XM_043219858.1 mRNA downstream 425094 6673230 ~ 6708654 (-) True flrt2
XM_043219857.1 mRNA downstream 452010 6673230 ~ 6681738 (-) False flrt2
XM_043220304.1 mRNA downstream 663679 6467779 ~ 6470069 (-) True glrx5
XM_043219826.1 mRNA upstream 16976 7156267 ~ 7158619 (-) True LOC122325011
XM_043220588.1 mRNA upstream 83345 7222636 ~ 7225982 (-) True LOC122325548
XM_043220587.1 mRNA upstream 83862 7223153 ~ 7225981 (-) False LOC122325548
XM_043220056.1 mRNA upstream 116208 7255499 ~ 7257574 (-) True LOC122325143
XM_043219601.1 mRNA upstream 169419 7308710 ~ 7313322 (-) True LOC122324872
TU201662 other downstream 682249 6432830 ~ 6451499 (-) False LOC122324366
TU201658 other downstream 719735 6412479 ~ 6414013 (-) False si:dkey-63b1.1
TU201577 other downstream 830772 6274754 ~ 6302976 (-) True G136460
XR_006247217.1 other downstream 1202626 5924475 ~ 5931122 (-) False zpax2
unassigned_transcript_2505 other downstream 1307017 5826620 ~ 5826731 (-) True trnal-caa_53
TU201939 other upstream 157570 7296861 ~ 7305724 (-) True G136707
TU201958 other upstream 196860 7336151 ~ 7340436 (-) False LOC122324874
TU201961 other upstream 196860 7336151 ~ 7339939 (-) False LOC122324874
TU201941 other upstream 287378 7426669 ~ 7429268 (-) False LOC122325546
TU201966 other upstream 293941 7433232 ~ 7436354 (-) False LOC122325222

Expression Profile