RNA id: XM_043219604.1


Basic Information

Item Value
RNA id XM_043219604.1
length 2080
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC122324874
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7335388 ~ 7340455 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGACTCGCTCGTGATTCGCGGATCCGCCACTTCCTGTAGCTGCCTCTTCCTGTAGCGCCGCCTCAAACAAAACAAGCGACTTCTCATAAAACCGAGAAGGAGGCCGCCGAGAAGATAATCTACCACCGCGGACGCGTACACTACTCCTCCGTTAATCAAGACGGGGTGTGTTTTCACACAAGCGCGGAGGCTGTGAGCTGGGAGTTACGGCGATGATGGCGTCCAGCTACAGCGCGAAGGAGGAGGACGGTCACCACTCCGGGTCCGTGGGGCTCGGCGGAGCGGCCATCCGGACCAGGAAGCCCGACAACACGGCCTTCAAACAGCAGCGGCTACCGGCCTGGCAGCCCATCCTGACCGCGGGCACCGTGCTGCCCGCCTTCTTCATCATCGGCCTCATCTTCATCCCCATAGTCGGCCTCTACGTGACGTCCAACAACATCAAGGAGTTCGAGATCGACTACACCGGAACTGACATGTCCAGCCCGTGTTTTAACTGCTCTCAAAGCTTCAGCTGGAACAGCACGAATCCCTGCAAATGTGTGCTGTTCTTCTCTCTAGACCAGCCCTTcgaaAGTAATGTCTTCATGTACTATGGACTCTCAAACTTCTACCAAAACCATCGGCGCTATGTGAAGTCCAGAGATGACAGCCAGCTTAACGGAGACGAGCGCTCACTTAAGGAGCCAAGCAAAGAATGTGAGCCGTACCGCACTAATGATAACAAGCCTATAGCCCCGTGTGGAGCCATTGCTAACAGCATGTTTAATGACACACTGGATCTGTTTTACATTGATCCCAATGGAACGAAAACAGAAATTCCTTTGATCAAAAAAGGGATTGCGTGGTGGACGGATAAGCACGTGAAGTTCAGGAACCCCGGTGGAAGCAACCCAAACCTCACCGCTGTTTTCATAGACACAGCGAAGCCGATCAACTGGCGCAAGCCCGTTTACGAGCTGGACGTTGACCTGGAAAACAACGGCTTCATAAATGAGGATTTCATCGTGTGGATGCGCACAGCCGCTCTCCCCACCTTCAGGAAGCTCTACCGGATCATCCAGAAGAAGAGCAACATGACACCCACCCTTCCCAGAGGAAACTACAGCCTGGAAGTCTCCTACAACTACCCCGTGCGCAGCTTTGAGGGCCGGAAGCGAATGATCCTCAGCACCATCTCCTGGATGGGAGGGAAAAACCCCTTCCTGGGCATCGCCTACATAACCGTGGGCTCCATCTGCTTCTTCCTCGGCGTAGTGCTCCTCTTCATTCATCACAAATACGGAAACCGCAACAACAGCTCCGATATTCCCAATTAAGCTCGCGGAGTGCGTGCCACCTGTCGGCGTTTCAGAGGTGCAGGAGCATTTGACCACTTgatgttttccttttatttattactaccCGAGATGCTGTGTCCACTtacaaagtttctttttttttttttttatttggatgttttctGATGATGGCTGGTGGTTCGTTTCAAGCATGTTTTGGCCGTCGATATGCACGTACGTCTGAGGTTAGCGCGATAGTCAACGAGCAGCCGAAATAAAGACCCAAGTTGTATAAAGTACAgtaaatgaatgtatattttttacctTCGGCCAAAAGTAATGTTTAAACGGGACTGCTTTTAACAGTTTGATGTACAAAGAATAATTTCACTTTCCCTCGAGGTTCTTAAAGGCGAATGCTGTGGCTCTGTTTACTTTCAAATGTCTTCGTAGTGCCAGGTTACGGTAGGGGTCAGTGACAACTACCGTTAAATTTTAAGGACCGTTCAAGTcgtctttttgtgtgtttgtttcctgGAGATGcttgtgcttttttaaagaaGCTTTGCTGTGTGTAATTCATGGCTTGCGAGGACCAAACGTTTCGTTCTTTGTCTATTTAATTGAAACCGTCTTGGGCTCATTTTGGCTGTCGCGTCTTTAAGTGTTTCAGCATGTCTGCCTCTAACAAATAAGCACTTTAGAAAGTGACAagccatacatttttttttttttggccagtttttagaagtgtgtgtgagttttatTGTTGGGTGAATAAAGCGTCTATTGGCTGAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201950 lncRNA downstream 53584 7281372 ~ 7281804 (-) True G136716
TU201914 lncRNA downstream 83516 7152468 ~ 7251872 (-) True G136696
TU201911 lncRNA downstream 183634 7151390 ~ 7151754 (-) True G136694
XR_006247162.1 lncRNA downstream 197058 7135774 ~ 7138330 (-) False LOC122324389
TU201952 lncRNA upstream 20412 7360867 ~ 7396292 (-) False G136717
TU201951 lncRNA upstream 53571 7394026 ~ 7396292 (-) True G136717
TU201970 lncRNA upstream 145438 7485893 ~ 7487411 (-) True G136724
TU201983 lncRNA upstream 203901 7544356 ~ 7598714 (-) False LOC122324530
TU202014 lncRNA upstream 240570 7581025 ~ 7652975 (-) True G136758
XM_043219603.1 mRNA downstream 9711 7321656 ~ 7325677 (-) True LOC122324873
XM_043219601.1 mRNA downstream 22066 7308710 ~ 7313322 (-) True LOC122324872
XM_043220056.1 mRNA downstream 77814 7255499 ~ 7257574 (-) True LOC122325143
XM_043220588.1 mRNA downstream 109406 7222636 ~ 7225982 (-) True LOC122325548
XM_043220587.1 mRNA downstream 109407 7223153 ~ 7225981 (-) False LOC122325548
XM_043219546.1 mRNA upstream 27856 7368311 ~ 7370195 (-) True nfkbiaa
XM_043220585.1 mRNA upstream 84381 7424836 ~ 7429282 (-) True LOC122325546
XM_043220186.1 mRNA upstream 91605 7432060 ~ 7436498 (-) True LOC122325222
XM_043219037.1 mRNA upstream 253806 7594261 ~ 7601602 (-) False LOC122324530
XM_043219038.1 mRNA upstream 267677 7608132 ~ 7620574 (-) True LOC122324531
TU201939 other downstream 29664 7296861 ~ 7305724 (-) True G136707
TU201897 other downstream 106425 7125748 ~ 7228963 (-) True G136688
TU201662 other downstream 883889 6432830 ~ 6451499 (-) False LOC122324366
TU201658 other downstream 921375 6412479 ~ 6414013 (-) False si:dkey-63b1.1
TU201577 other downstream 1032412 6274754 ~ 6302976 (-) True G136460
TU201941 other upstream 86214 7426669 ~ 7429268 (-) False LOC122325546
TU201966 other upstream 92777 7433232 ~ 7436354 (-) False LOC122325222
XR_006247310.1 other upstream 199670 7540125 ~ 7540240 (-) True LOC122325568
XR_006247193.1 other upstream 250123 7590578 ~ 7601602 (-) False LOC122324530
TU202009 other upstream 353500 7693955 ~ 7696065 (-) True G136754

Expression Profile