RNA id: XM_043219037.1


Basic Information

Item Value
RNA id XM_043219037.1
length 979
RNA type mRNA
GC content 0.54
exon number 4
gene id LOC122324530
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7544356 ~ 7601602 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATTATCACCTGCCATGGTTGTATCACATCAGtactttgtcttttttgtatttcagagCATAGGAAAGGGTTCTCTCTGGTCTATTGATCCTGACTACAGACACAATCTGATCCAGGCGCTGAAGAAGACTCCATATCATCCGTATTCCCCTCGGCTTCCAAAACCTTCTACCTCCCCGTCTGCCTCTCCTCAGCAATACCACAGTCCTCCACTATGGCCAGGAAGTCCACTCTTCAGAAAGAATGGAGGAGTGCTCTTACAAGTTCCACAGAGAGTGATACAGCACAGCTCACGTGTGGCCGCTCAGGGGCTCTTTCCGGTTATCAGACCCCTTCCTCTGAGTCCCGTGAGCAAGAGGACCACAGCCGTGAGATCCGCCCTGGGCGACTATCTGACCCGGGGTAAGAACAGCCTGCGCAGTGACTCTCCTCCACCCAGCGATGATCAGCAGGAGGACCACACATACAGCAGCTCGCAGTCCCTAAACGCGAAGGGGGACGTTTCTTCCTCCCTCTCCTCCTGCTCCACTCAGGGTTCCCTCTCTGCCTACAGCCCCGGCCAGGAGGTGACGCTCACTGAGGTCAAGGAGGAGCAGAAAGACTTTCCGCTGGACGCCACGCCACCTCCTTCCCAGCTGCTCCAGCGCAGAAGACTGCTGTGGACCAAAGGTCACCTACGGACCCCCGGCGACATGCTTCCCCTGAAGAAGAGACGGGCCGAAAAGCTGCTGGTCAAAGAGGAGGAAGACGAGGAGATGAAGGAGGCGGCGGGGTCGTTGCTTCACCTGGCCGGCGTGCGCACCGGCGTCAATAAAAACGCTCTGCGTACGTGTAAGAAGGAGCCGAAAGAGGAAGCCAATGATTAGCaatgaacgaaaaaaaaaatcccgtTCACACAGATCTAAATACTTCTGTTCCAGGATATCAGGTGAATTCTAGTCAGTCGTTGCAATATCAATAAAATCACTGTTGTCCCTG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0009888 tissue development biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201970 lncRNA downstream 106850 7485893 ~ 7487411 (-) True G136724
TU201952 lncRNA downstream 197969 7360867 ~ 7396292 (-) False G136717
TU201951 lncRNA downstream 197969 7394026 ~ 7396292 (-) True G136717
TU201950 lncRNA downstream 312457 7281372 ~ 7281804 (-) True G136716
TU201914 lncRNA downstream 342389 7152468 ~ 7251872 (-) True G136696
TU202029 lncRNA upstream 67978 7669580 ~ 7771831 (-) True G136772
TU202035 lncRNA upstream 74341 7675943 ~ 7677043 (-) True G136774
TU202019 lncRNA upstream 75514 7677116 ~ 7782233 (-) True G136763
TU202030 lncRNA upstream 169325 7770927 ~ 7771831 (-) False G136772
TU202004 lncRNA upstream 184003 7785605 ~ 7788841 (-) False zyg11
XM_043220186.1 mRNA downstream 157763 7432060 ~ 7436498 (-) True LOC122325222
XM_043220585.1 mRNA downstream 164979 7424836 ~ 7429282 (-) True LOC122325546
XM_043219546.1 mRNA downstream 224066 7368311 ~ 7370195 (-) True nfkbiaa
XM_043219604.1 mRNA downstream 253806 7335388 ~ 7340455 (-) True LOC122324874
XM_043219603.1 mRNA downstream 268584 7321656 ~ 7325677 (-) True LOC122324873
XM_043219038.1 mRNA upstream 6530 7608132 ~ 7620574 (-) True LOC122324531
XM_043219292.1 mRNA upstream 184000 7785602 ~ 7799589 (-) True zyg11
XM_043219291.1 mRNA upstream 184000 7785602 ~ 7799589 (-) False zyg11
XM_043219131.1 mRNA upstream 255420 7857022 ~ 7874571 (-) True angptl1a
XM_043219114.1 mRNA upstream 379077 7980679 ~ 7983050 (-) True faslg
XR_006247310.1 other downstream 54021 7540125 ~ 7540240 (-) True LOC122325568
TU201966 other downstream 157907 7433232 ~ 7436354 (-) False LOC122325222
TU201941 other downstream 164993 7426669 ~ 7429268 (-) False LOC122325546
TU201958 other downstream 253825 7336151 ~ 7340436 (-) False LOC122324874
TU201961 other downstream 254322 7336151 ~ 7339939 (-) False LOC122324874
TU202009 other upstream 92353 7693955 ~ 7696065 (-) True G136754
TU202297 other upstream 721511 8323113 ~ 8644759 (-) False pigc
TU202296 other upstream 730165 8331767 ~ 8644759 (-) False pigc
TU202293 other upstream 779892 8381494 ~ 8644759 (-) True pigc
TU202479 other upstream 1217252 8818854 ~ 8819327 (-) True G137054

Expression Profile