RNA id: TU202035



Basic Information


Item Value
RNA id TU202035
length 922
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G136774
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7675943 ~ 7677043 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cgtaaaagcatttcactttattgtgctgtcaaacaattaatcgcatcctaaataattttttgtgtttacataatacatgtgtgtgcaCCGTTCATATTAtgtagaaatacacaaatatacaccgcacacatatattatgtagacaaaaacgtttatttaggATGCGTTTACtctcaattaatcatttgagagCACTAATAATCACTCGTTTCCATATTTCTGATAAAAACGCCACCACAAAATTGTATAGAGAAAACTCCTTCTCAACCGTCTGCTTATAAAAACAGTAGCATTTTCCTAAATGTTACAGGCAAAACTATGCAAAAATTGAGGGCACAGAGAAAAAGCACCtactgtgtgtttattattatgcatatccAATCATTCTCACCCCCAGCCATAATCGTATTTGCAGCTGGGAAAAAATTACCTGTTCGGTGCAACACTGAAAGTGATGATACAGAACTCTGAAGTCTGATAGAGCAGGATTTGAATATGGACGAGAAACATCACCCTTATGTCTCACCGATGTCATTCATTAGCGATCGAAGGCCATGTACAAACAGCTCTGCCTCAGGGTTACTCATCTGAGCTCTCTCCTTAAGATCTGCGCCTATCAACAACACCGCATTTTACAAATGACAACATCTTTAAAAGCAGGCTGTCGACACCGTTATGTGTGAGCGTGCACAAAACCTGCACAAAAGACTCCGGGTATCGAGCTCTTGAAGATGACCGCGCGAACCGCTTCGTCGTGATGCAACGATGACACCAGCTCTCTCATCTGCGCACGGAGACACAGAAATCGATGCGCGTTCAAACTCAAATTGATTTGAGAAAGAGCTCTGGGAGAGACACGCCCAGgatattgttatttattcaagGCCTGACACACTTTTGCCAGACTTTCTTTTGATAAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU202014 lncRNA downstream 22968 7581025 ~ 7652975 (-) True G136758
TU201981 lncRNA downstream 74401 7590586 ~ 7601542 (-) True LOC122324530
TU201983 lncRNA downstream 77229 7544356 ~ 7598714 (-) False LOC122324530
TU201970 lncRNA downstream 188532 7485893 ~ 7487411 (-) True G136724
TU201952 lncRNA downstream 279651 7360867 ~ 7396292 (-) False G136717
TU202019 lncRNA upstream 73 7677116 ~ 7782233 (-) True G136763
TU202030 lncRNA upstream 93884 7770927 ~ 7771831 (-) False G136772
TU202004 lncRNA upstream 108562 7785605 ~ 7788841 (-) False zyg11
TU202062 lncRNA upstream 213215 7890258 ~ 7893325 (-) True G136792
TU202090 lncRNA upstream 235105 7912148 ~ 7912564 (-) True G136804
XM_043219038.1 mRNA downstream 55369 7608132 ~ 7620574 (-) True LOC122324531
XM_043219037.1 mRNA downstream 74341 7594261 ~ 7601602 (-) False LOC122324530
XM_043220186.1 mRNA downstream 239445 7432060 ~ 7436498 (-) True LOC122325222
XM_043220585.1 mRNA downstream 246661 7424836 ~ 7429282 (-) True LOC122325546
XM_043219546.1 mRNA downstream 305748 7368311 ~ 7370195 (-) True nfkbiaa
XM_043219292.1 mRNA upstream 108559 7785602 ~ 7799589 (-) True zyg11
XM_043219291.1 mRNA upstream 108559 7785602 ~ 7799589 (-) False zyg11
XM_043219131.1 mRNA upstream 179979 7857022 ~ 7874571 (-) True angptl1a
XM_043219114.1 mRNA upstream 303636 7980679 ~ 7983050 (-) True faslg
XM_043219116.1 mRNA upstream 308848 7985891 ~ 7992309 (-) False si:dkey-86e18.1
XR_006247193.1 other downstream 74341 7590578 ~ 7601602 (-) False LOC122324530
XR_006247310.1 other downstream 135703 7540125 ~ 7540240 (-) True LOC122325568
TU201966 other downstream 239589 7433232 ~ 7436354 (-) False LOC122325222
TU201941 other downstream 246675 7426669 ~ 7429268 (-) False LOC122325546
TU201961 other downstream 336004 7336151 ~ 7339939 (-) False LOC122324874
TU202009 other upstream 16912 7693955 ~ 7696065 (-) True G136754
TU202297 other upstream 646070 8323113 ~ 8644759 (-) False pigc
TU202296 other upstream 654724 8331767 ~ 8644759 (-) False pigc
TU202293 other upstream 704451 8381494 ~ 8644759 (-) True pigc
TU202479 other upstream 1141811 8818854 ~ 8819327 (-) True G137054

Expression Profile