RNA id: TU202296


Basic Information

Item Value
RNA id TU202296
length 1734
RNA type TUCP
GC content 0.42
exon number 3
gene id pigc
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 8323113 ~ 8644759 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaagtgttttatttataaattcacaGTTTCTAATGGCACTACACTGCTGTAGTtacaactgaaaaaacaaaaaaatcaaatactgtGCAGTTCGTCCTCACAGATTACGAGATTTCATTTGGGCGCCACCTAGCGGACGTTTAAATAAATCAGGCATCCGCCACTAGAGGGCGCCGTACTAAGGAAAGCCTGGGGCGAAAAAGCACTTGTACAAGGTGTGGTGTAGAAAAAACAAAGGCATGTGGAGTTCTCCAAAAAGTGCACAGGAGAGACACGCAGCAGTCTCTGGTGTACTGGAAAGAGTCATCAACATACACACTGATGAGAAAACATCCACTAACTCCACAAGCGTATATCAGTCACcattcaaaaaggaaaaaagtagtGAAACATGTATCATGGAAACCACAGAGACGGTCCGTTGCACACCATCCTGatctttcccttttttttttttttttttttgaaattagtGATGCGAATTCACATTCTCTAACCCCCCCACCCCCACCACCAGTCTCATTAAAGGTCAATGACGCGATCGCCCGCATGAAAGAAAACACTTACAAtcttacaaaacacacagagaaactcCACTGGGATGTCGAATGGTCTCTTGGgtgcattaaaaacaactaaGAAAGcagcgaacacacacacgcacgcacacggaAAGTGTGTTAAGAGGGACATGGAGTGTGTGAAGAAAAGatgctggacacacacacacacgcacacaatctTTTACAGGTACATGACAGGTGAGGACAGACCAGACGGTTGCTTTGCTGGACTCATGCATAATATTTGCACAACAACGAGAGCTCGGCCGCTTTTACACTTCACCTCCAATCCAGTAACCCAAAGCTCGTCCGAACAGATCCAGCGAGGAAGAGCGAAGCCAGAAGCTGTACATGTCTACGATCGCGTTAAGAGCATCGCAACAGGTTTATCTGATGTGTcgcttgatttaaaaaaaagaaagaaggcaaaAGTGGAATCCAGCTTTCCCAAATCAACAGAACAGGAAGTTGATGTCCGTACCACTTGTGTGTATCTGTAATATGGAGGTCGGAGGGGCCGCTGTATTTCGTATATCACATGACCGTGATCTCATAGAGCCCGggtcacatttaaataaataaatacataaataattaccACTAGAATAACAGAATGTCCCCCACAAACTCCCCGTGTACATATAAAGCgtgaaaaatgtgtcttttttttactaCGGCTCCATTGAACATGAAGATGATGAGCTGTAAACATACTTGAGATGCTGTTGGGTGCGTtgataaatgtatgtatgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCAGTCCCAGGTATTTCTGCAGCTTTAATCGTTGTTCCTGTAGAGCAGCATAGCAGCAGGACATTTCTGCCAGTGTTGAATTGATAGAATATAATAAGCCTTTGTTGGCTTTTCTGTGGTATCATTTATAACTGACAGAATAACAACTCGTACAAACAGTCTGTGTGACACCGCAATAAAGTTGCCAAATTAAAGCATTCTGTGCAAAAAGAGCGTCTtgtaaattgtatataaatatataaatgaagttGTGTTTGGCAAAATAAGATcaagaataatgttttttttccacattttctgAAAACGAGAGTGCTGCTGGAAATTCTCACTGCGTCGCTAGGTTACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247279.1 lncRNA downstream 17800 8311491 ~ 8313967 (-) True LOC122325283
TU202280 lncRNA downstream 70475 8261083 ~ 8261292 (-) True G136935
TU202250 lncRNA downstream 123823 8202900 ~ 8207944 (-) True G136909
XR_006247275.1 lncRNA downstream 149108 8153665 ~ 8182659 (-) False LOC122325257
TU202478 lncRNA upstream 105788 8750547 ~ 8750798 (-) True G137053
TU202482 lncRNA upstream 177032 8821791 ~ 8822181 (-) True G137057
TU202535 lncRNA upstream 474176 9118935 ~ 9124743 (-) True G137102
TU202568 lncRNA upstream 577520 9222279 ~ 9236054 (-) False LOC122324791
XR_006247228.1 lncRNA upstream 577522 9222281 ~ 9240697 (-) True LOC122324791
XM_043220261.1 mRNA downstream 44522 8284042 ~ 8287245 (-) True itpa
XM_043220262.1 mRNA downstream 60544 8261758 ~ 8271223 (-) True vamp4
XM_043220258.1 mRNA downstream 73776 8251452 ~ 8257991 (-) False myoc
XM_043220257.1 mRNA downstream 73776 8251452 ~ 8257991 (-) True myoc
XM_043220007.1 mRNA downstream 196736 8130352 ~ 8135031 (-) True prdx6
XM_043219441.1 mRNA upstream 433986 9078745 ~ 9095364 (-) True prkaa2
XM_043219468.1 mRNA upstream 627301 9272060 ~ 9278965 (-) False bloc1s2
XM_043219471.1 mRNA upstream 628401 9273160 ~ 9283383 (-) False bloc1s2
XM_043219470.1 mRNA upstream 628401 9273160 ~ 9279709 (-) False bloc1s2
XM_043219467.1 mRNA upstream 628401 9273160 ~ 9278963 (-) False bloc1s2
TU202009 other downstream 635702 7693955 ~ 7696065 (-) True G136754
XR_006247193.1 other downstream 730165 7590578 ~ 7601602 (-) False LOC122324530
XR_006247310.1 other downstream 791527 7540125 ~ 7540240 (-) True LOC122325568
TU201966 other downstream 895413 7433232 ~ 7436354 (-) False LOC122325222
TU201941 other downstream 902499 7426669 ~ 7429268 (-) False LOC122325546
TU202479 other upstream 174095 8818854 ~ 8819327 (-) True G137054
TU202481 other upstream 176395 8821154 ~ 8821719 (-) True G137056
XR_006247226.1 other upstream 610789 9255548 ~ 9278965 (-) False bloc1s2
XR_006247225.1 other upstream 620613 9265372 ~ 9278965 (-) False bloc1s2
XR_006247227.1 other upstream 620613 9265372 ~ 9278965 (-) True bloc1s2

Expression Profile