RNA id: XM_043220259.1


Basic Information

Item Value
RNA id XM_043220259.1
length 1847
RNA type mRNA
GC content 0.46
exon number 1
gene id pigc
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 8323113 ~ 8644759 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGGGCAGACAGTGGTCCGGGAGCTCCTGCAGCCGTCCCGTGGCGTAAAGTCCTATACGAACGCCAGCCTTTCCCGGACAATTATGTGGACCGCCGCTTTCTGGAGGAGCTGCGGCGCAACATCCGAGTGCATCAGTACCGCTACTGGGCGGTGGTGCGCGAGACGGGGCTCATTGCTCAGCAGGTGTCCTGCGTAGCCGTCTTCCTCACGTTATGGTCTTACATGGAGCAGGGAGACCTGGTGCCGTCCGCGGTGCTCTGGGTCTGTTTAGGCTGCGCTCTGCTGGGCTACGGACTCTACGAGTTCCTAGGAGGCTCTCGTGTTCGGGAGCGAACGCACCTGGCCGACCTGCAGAGCGCCGCCATCTTCCTGGCGTTTACCTTCGGGTTTTCACCGGTGTTGAAGACTCTGACCGAGTCGGTTAGCACAGACACCGTTTACGCCATGTCAGCCGTCATGCTCTTGGCTCACTTGGTGTCCTTCCCGTATGCTCGGCCCAGTCCGCCGGGCAGTCTTTCGCTCAACGCGGCTCTTTTCGGCTCGGTGTGTCTGGCGTCCCGGCTGCCTGGCGCCCTGCATACCTTCACCATGCTGAACTGCGCCCTCCTGGTGTTCGCTCTGTGGCCCTGTCTGCTGCAGCGCGTGCGGGAGAAGGCCGAGTGGAGCTTCCCGTGGGCCGCGGCGCTGGTGTGTCTGGCTGGAGTCGGGGGTCTGGGGCGCCTGTGGCCCGAGGGCGCTCTTCTGCTCTCGCTGGCTCTGTTAACACTAACTTTAGTCTGTCCACTGTTGCTGGTCCTCCTGCAGAGGCACAAGGACAACATCCACGGCCCTTGGGACGAGGCAGAGATTAGAGAGGACCTGTCCCGCTTCTTGAATTGAAAATGCAGGTTTTAAAGAGCATGCTTTTGATAAGATTCCCTTTGGAgggatgattttgtttttttttttttaagagaaagtttacctaaaaataaatCGTCTGTCATCGGTTACAAGGTTTGTGATTACAAACCTTGtacagttagattttttttcttgtggaacatgaaatacatttttttgaggATATGCTGGTAACagttttgtttgcctttgacttCTGTTGTAGAAAcactttcttttgtgttccagaggttaaaatgacagattttttagTTTTGGGTAAGCTGTGCCTTTAACCTCAGGGAAAAATAAGAACGGCTGCTgggaaatgtgttttcattttaccagtatgaaattaaattattgttagtgtcaaaaaacatgtataggtcacatttattaaaaaggtaAATTTCATTTACTTCAAAAAATGAACCACtaaacatataattttttagaCAAATAATATGATGTTGGCTTTGGTTTATAATCactgttttgtgattttaaaacgaTGGAAGTAGGGAATggtttttaacagtatttatatattaacgtGCATATTCTGGTTCTTGATTAAACGTTTAATCATTAATTGCTCATATTTTAACATGCTCACTATGttggaaataaatgtttctaatatataacatatatatagtttctaataacttatgtatgtatgtatgcatgtatgcatgtatatggaGGTGATAGGAAATTTGGACAAGCTGTTGCCCACAAGAGGTCAGTCAGTCCCAGGTATTTCTGCAGCTTTAATCGTTGTTCCTGTAGAGCAGCATAGCAGCAGGACATTTCTGCCAGTGTTGAATTGATAGAATATAATAAGCCTTTGTTGGCTTTTCTGTGGTATCATTTATAACTGACAGAATAACAACTCGTACAAACAGTCTGTGTGACACCGCAATAAAGTTGCCAAATTAAAGCATTCTGTGCAAAAA

Function

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247279.1 lncRNA downstream 17938 8311491 ~ 8313967 (-) True LOC122325283
TU202280 lncRNA downstream 70613 8261083 ~ 8261292 (-) True G136935
TU202250 lncRNA downstream 123961 8202900 ~ 8207944 (-) True G136909
XR_006247275.1 lncRNA downstream 149246 8153665 ~ 8182659 (-) False LOC122325257
XR_006247276.1 lncRNA downstream 149246 8153665 ~ 8182659 (-) True LOC122325257
TU202327 lncRNA upstream 41734 8375485 ~ 8376716 (-) True G136962
TU202328 lncRNA upstream 41734 8375485 ~ 8637526 (-) False G136962
TU202291 lncRNA upstream 245947 8579698 ~ 8644759 (-) False pigc
TU202349 lncRNA upstream 264059 8597810 ~ 8600953 (-) False LOC122324857
TU202478 lncRNA upstream 416796 8750547 ~ 8750798 (-) True G137053
XM_043220261.1 mRNA downstream 44660 8284042 ~ 8287245 (-) True itpa
XM_043220262.1 mRNA downstream 60682 8261758 ~ 8271223 (-) True vamp4
XM_043220258.1 mRNA downstream 73914 8251452 ~ 8257991 (-) False myoc
XM_043220257.1 mRNA downstream 73914 8251452 ~ 8257991 (-) True myoc
XM_043220007.1 mRNA downstream 196874 8130352 ~ 8135031 (-) True prdx6
XM_043220260.1 mRNA upstream 2856 8336607 ~ 8340950 (-) True tmed5
XM_043219561.1 mRNA upstream 69048 8402799 ~ 8408257 (-) True LOC122324856
XM_043219920.1 mRNA upstream 238801 8572552 ~ 8591185 (-) True LOC122325066
XM_043219562.1 mRNA upstream 257941 8591692 ~ 8600955 (-) True LOC122324857
XM_043219441.1 mRNA upstream 744994 9078745 ~ 9095364 (-) True prkaa2
TU202009 other downstream 635840 7693955 ~ 7696065 (-) True G136754
XR_006247193.1 other downstream 730303 7590578 ~ 7601602 (-) False LOC122324530
XR_006247310.1 other downstream 791665 7540125 ~ 7540240 (-) True LOC122325568
TU201966 other downstream 895551 7433232 ~ 7436354 (-) False LOC122325222
TU201941 other downstream 902637 7426669 ~ 7429268 (-) False LOC122325546
TU202293 other upstream 47743 8381494 ~ 8644759 (-) True pigc
TU202479 other upstream 485103 8818854 ~ 8819327 (-) True G137054
TU202481 other upstream 487403 8821154 ~ 8821719 (-) True G137056
XR_006247226.1 other upstream 921797 9255548 ~ 9278965 (-) False bloc1s2
XR_006247225.1 other upstream 931621 9265372 ~ 9278965 (-) False bloc1s2

Expression Profile