RNA id: TU202535


Basic Information

Item Value
RNA id TU202535
length 463
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G137102
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 9118935 ~ 9124743 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAATTTCCAGATTGGTTTATGTTCCAACCAATAAAGATTGACTCCTTAAAAgatattaaactatatttaaaggaatataaAATGGATAGAAATACAAAGATGTACTTACTATGCAGTAGGCCACCAGGGCTCCTTGGGCAAATCCAGCTAAAACATCAGTGGGGTGGTGCTTGTGATCAGAAACACGTGATAACCCAGTATAGAAGGCCATCATTAGCAAGGTAAACTGCAGGAGTGGCCTCAGCAGACGGGCTCCTCGCCATGTGAACCGAGACTGCAGGTAGAACTAAAGAAACAGAGATTAAAAGAAATTGAATCAATGGGAACACTTGTGCAACTtatgtttttatacataatcgctgatataatgcaaaaagttaggattagtgtaaaaaaaaaatgtaaaagtgcgTGATCCATTCAAAAAgagaatataaataaagcataaggGATGAGGGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202482 lncRNA downstream 296754 8821791 ~ 8822181 (-) True G137057
TU202478 lncRNA downstream 368137 8750547 ~ 8750798 (-) True G137053
TU202291 lncRNA downstream 474176 8579698 ~ 8644759 (-) False pigc
TU202328 lncRNA downstream 481409 8375485 ~ 8637526 (-) False G136962
TU202349 lncRNA downstream 517982 8597810 ~ 8600953 (-) False LOC122324857
TU202568 lncRNA upstream 97536 9222279 ~ 9236054 (-) False LOC122324791
XR_006247228.1 lncRNA upstream 97538 9222281 ~ 9240697 (-) True LOC122324791
TU202579 lncRNA upstream 127969 9252712 ~ 9252970 (-) True G137132
TU202599 lncRNA upstream 200910 9325653 ~ 9328721 (-) False pcsk9
TU202720 lncRNA upstream 268207 9392950 ~ 9393229 (-) True G137250
XM_043219441.1 mRNA downstream 23571 9078745 ~ 9095364 (-) True prkaa2
XM_043219562.1 mRNA downstream 517980 8591692 ~ 8600955 (-) True LOC122324857
XM_043219920.1 mRNA downstream 527750 8572552 ~ 8591185 (-) True LOC122325066
XM_043219561.1 mRNA downstream 710678 8402799 ~ 8408257 (-) True LOC122324856
XM_043220260.1 mRNA downstream 777985 8336607 ~ 8340950 (-) True tmed5
XM_043219468.1 mRNA upstream 147317 9272060 ~ 9278965 (-) False bloc1s2
XM_043219471.1 mRNA upstream 148417 9273160 ~ 9283383 (-) False bloc1s2
XM_043219470.1 mRNA upstream 148417 9273160 ~ 9279709 (-) False bloc1s2
XM_043219467.1 mRNA upstream 148417 9273160 ~ 9278963 (-) False bloc1s2
XM_043219466.1 mRNA upstream 203898 9328641 ~ 9335059 (-) True pcsk9
TU202481 other downstream 297216 8821154 ~ 8821719 (-) True G137056
TU202479 other downstream 299608 8818854 ~ 8819327 (-) True G137054
TU202297 other downstream 474176 8323113 ~ 8644759 (-) False pigc
XR_006247226.1 other upstream 130805 9255548 ~ 9278965 (-) False bloc1s2
XR_006247225.1 other upstream 140629 9265372 ~ 9278965 (-) False bloc1s2
XR_006247227.1 other upstream 140629 9265372 ~ 9278965 (-) True bloc1s2
XR_006247224.1 other upstream 205394 9330137 ~ 9335061 (-) False pcsk9
TU202840 other upstream 813222 9937965 ~ 9938877 (-) True G137330

Expression Profile