RNA id: XM_043219466.1


Basic Information

Item Value
RNA id XM_043219466.1
length 3423
RNA type mRNA
GC content 0.47
exon number 12
gene id pcsk9
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 9325653 ~ 9335061 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTTGATCGCACGGGCTTCGTTTTGTGACATGTCTGCGCAGGAATCGTAAACGCAGAAAACGCGCGTGGGTGGGCCGTAACTCGACTCCTCGTCCGCTGCTTTATTAACGAGCCATCTCTCGATATAAGGACGCCCCACCTCAGTCACTCAGAGGGATTTAAGTGACATGTTAAGTGACATGAGGATACGCTTCAGCCCCAAACTCTCAGCTTCACACGCCCGCCACGTTATACGACGAACGACAGTGCAAAAAAAGTACTTTCTTAGCACCATCACCTAAAACCGCTCGTATCATATCGCTTGGTTTACTCTTCACAGAATGAAAAGCTTCGTGACTGCGTGTTGGCTGAGTTTTCTGCTGAGTCTTGCGGCGGTGGTTGAGAGTGATGAAGACTACACCGAGGATGAAGAGATGATCCTGTCTTTAATTCTGCAGGATGACACCCAGCCTGAAGCAGAGAGCAGGCCATCCGCCCAGTTCTACAGGTGCACTAAGGACGCGTGGCGCATGCCGGGTCAGTATATCGTGGTGATGAGGAGCGGGACGCACGTGAACCAGGTGGAGCGCACCGCGCGCAGACTCCGCGCGAAAGCAGCCAAACGGGGCTATCTGATCGAAATACTGCAGACTTACTCGGGAGCTTTCCACGGCTTTCTGGTGAAAATGAGCAGCGACGTCCTTCACATGGCAGTAAAGCTGCCCCATGTGGACTACGTTGAAGAGGATTCCTCCATCTTCGCCCAGAGCATCCCATGGAACCTTCAGCGCATccttcaaaacaaacacaagactGGAAAATACTCACCACCCAATGACGGAGCAAAGGTGGGAGTGTACCTTTTGGACACGAGCGTTCAGGCGACTCATCGCGAGATCGAGGACAGGGTCATGGTGACGGACTTCAACAGCGTGCCGGAGGAGGATGGGGTCAGGGTTCACAGACAGGCTAGTCAGTGTGACGGTCATGGCACGCACATCGCAGGTGTGGTCAGTGGACGGGACTCCGGTGTAGCTCGAGGTGCCAGTGTGAACAGCGTCCGGGTGTTAAACTGCCAAGGCAAGGGCACCGTGTCAGGAGCTTTAGCAGGTCTGGAGTATGTTCAGTCGTCTCTGATGTCTCAGCCTATCACACCCGTGATCCTACTGCTGCCGTTTGTAGGGGGATTCAGTCGCACCCTCAACGCTGCCTGCAGGAAAATGGTGGAGTCTGGCGCGGTGCTTATTGCTGCGGCTGGTAACTACAACGATGACGCTTGTCTGTACTCGCCAGCCTCAGAGCCTGAGGTGATAACAGTAGGGGCTGTTAATTTCGCCGACCAGCCCTTGAGCACTGGGACGACGGGCACCAACGTGGGCCGCTGCGTGGATGTGTTCGCACCCGGTGATGACATTGTCAGCGCGTCCAGCGACTGCTCCACCTGCTTCACCACCAAGAGCGGAACGTCACAGGCAGCCGCGCACGTTGCTGGTATAGCGGCGGTGCTCCTGAATCTGAATCCGAACTCTAGCTCTGCCGAGCTTCTGCAACAGCTCCTCCATCATTCAGTCAAACAGGTCATTAACCCAGAGTCTCTGCCACTGAACCACCGTCTCGCTACACCCAACACGGTGGTCGCCCTGCCTGACACGACCTCCACACTCACAGGAGAGCATCTGCTCTGTAGATCCGTTTGGTCTGAGCAGTCAGCTGCTAAAGGTTCGGCCACGGCTGCAGCCCGTTGTCGTCACGGTGAAGAGATGCTGAGCTGCTCAAGTTTCTCACAAAATGGAGCAAGAGCTGGAGAAAGAATGGAGGAGAGAGACGGGCAGAAAGAGTGTGTTGCTGTTAATGGGAATGGAGGGCAAGGTGTGTTCGCTGTAGCACGCTGCTGCACAGGCCATAAAGCTCAGTGCCAGACGTCAGAGAGTCCTCAGAGAGGAGCGGATGCAGAGTGCCCTCCAGACCACCAGCTGACAGGCTGCAGTTCTTTATCTGGAGATGCATCGGACTCTGATCGACCTCAATATGGCATCCGAAGGGCATGTCTTGCTAAAACGGGTGTAACTTCATACGCCTCCTGCTGCCACACATCCTCTCTAGAGTGCCGGCTGAAAGAGCACGAGTCTACGGCTCTCAGCGAGCAGGTGGAGGTTTCATGCGAAAACTCGTGGACGCTGACAGGCTGTCAGGGTCTGTCGCTCGGTTCTGTCGTTCGCGGGGCATTTGCTTTGGCTAACACCTGTGTAGTTCGTACATCTGGAGGAGGTACAGGAGCTGCCGCCATCGCCACCTGCTGCAGGCACCGTCTGTCCAACCAGCCGACTGATCACTGAGGGATGTGTTCTTCTTTTCTCACTTCTCTAAACATGTAACCATTAACCATGGACATAACCactataacaaatataatagtTAGGGGTGTTACACAAGTAAGctcaattctgtcattatgcAATATTACATGACAGAGAAGTGCATTGTTACCAGTCCTGGACATAACCATACTCAATCTAAAACTACAAGGAGcgctaaaacacatttaaaggcctttaaacagctaaaacatatttatacagGCGTGGTTGCATCAATATTAGAATTCAGATCGATACCGATGATTTGTTCAGGCAACACAAATACCATTTTccttgaataataataataataaaaacaaaactcatgataaagtgtttttaagtcTACTAGTGAATTCAGGCATTATTAAGATTTgctaacaattacatttaaaagtggcAAAGCAAGCATTAGATGAGCGCTAGTTATAAAAAGAGGAAATAAGCATGTAGAAAATATACAATATCAggtaatatatttcaaatatgtagCAATACCGCTAAATTAAAACTGATATTATAGATAATACCACTTTGACCATATGTAGGACCATCACTTttcatattaacatatatatactatacataattaaataaaaaaaatccccaatATCGGTAACGGATATTATAGATAATACCACTTTGCCATTATTTAGGACTggcacttttcatttttatactaATAGAATGCATTTACAGTATGTAACAAGAcggttaaataaaaaaaatctctgcaTAGTCTGTATAGTCGAAAAATGATATTATAGATACAACTTTGACTATTTAGTACTTCGAAATGTTTGTTACACACATATTCTGAATTGAAACTGTTGTATTTTCGCTATTTCTGGCAAGAGCATTACCTATTATTATGCATGTGTATTGTTCATGTAAGAGTGTAATTCttcttataaatgtatatttttatactgcaAACCTTGGCAACTTTATGTCCTGGTCTACTTCAGACTTGGCACATACAAAACCACACAGTCTGAAAACTTGTGCATTccagtttttcctttttatatcaaatgttttcattgtcaAACTCTgatgtacaaattaaaatgtggtTTTAACATG

Function

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K13050 PCSK9; proprotein convertase subtilisin/kexin type 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202579 lncRNA downstream 75671 9252712 ~ 9252970 (-) True G137132
XR_006247228.1 lncRNA downstream 87944 9222281 ~ 9240697 (-) True LOC122324791
TU202568 lncRNA downstream 92587 9222279 ~ 9236054 (-) False LOC122324791
TU202535 lncRNA downstream 203898 9118935 ~ 9124743 (-) True G137102
TU202482 lncRNA downstream 506460 8821791 ~ 8822181 (-) True G137057
TU202720 lncRNA upstream 57891 9392950 ~ 9393229 (-) True G137250
TU202723 lncRNA upstream 65323 9400382 ~ 9401209 (-) True G137253
TU202725 lncRNA upstream 69071 9404130 ~ 9404541 (-) True G137255
TU202738 lncRNA upstream 105178 9440237 ~ 9447911 (-) True G137264
TU202737 lncRNA upstream 109523 9444582 ~ 9447911 (-) False G137264
XM_043219471.1 mRNA downstream 45258 9273160 ~ 9283383 (-) False bloc1s2
XM_043219470.1 mRNA downstream 48932 9273160 ~ 9279709 (-) False bloc1s2
XM_043219468.1 mRNA downstream 49676 9272060 ~ 9278965 (-) False bloc1s2
XM_043219467.1 mRNA downstream 49678 9273160 ~ 9278963 (-) False bloc1s2
XM_043219441.1 mRNA downstream 233277 9078745 ~ 9095364 (-) True prkaa2
XM_043220049.1 mRNA upstream 872 9335931 ~ 9339220 (-) True bsnd
XM_043220048.1 mRNA upstream 4304 9339363 ~ 9355284 (-) True si:dkeyp-51f12.3
XM_043220047.1 mRNA upstream 4304 9339363 ~ 9351638 (-) False si:dkeyp-51f12.3
XM_043220382.1 mRNA upstream 22349 9357408 ~ 9359541 (-) True si:dkeyp-51f12.2
XM_043220109.1 mRNA upstream 41990 9377049 ~ 9381993 (-) True ftr85
XR_006247226.1 other downstream 49676 9255548 ~ 9278965 (-) False bloc1s2
XR_006247225.1 other downstream 49676 9265372 ~ 9278965 (-) False bloc1s2
XR_006247227.1 other downstream 49676 9265372 ~ 9278965 (-) True bloc1s2
TU202481 other downstream 506922 8821154 ~ 8821719 (-) True G137056
TU202479 other downstream 509314 8818854 ~ 8819327 (-) True G137054
TU202840 other upstream 602906 9937965 ~ 9938877 (-) True G137330
TU203003 other upstream 1232238 10567297 ~ 10570737 (-) True G137451
TU203048 other upstream 1386862 10721921 ~ 10724069 (-) True G137469
unassigned_transcript_2506 other upstream 1597503 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 1797567 11132626 ~ 11136588 (-) False LOC122324412

Expression Profile