RNA id: TU202737


Basic Information

Item Value
RNA id TU202737
length 3255
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G137264
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 9440237 ~ 9447911 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CtctcattgttattttattccCGAACAGTGCAAACACAAGTATAAAAGATCTCAATATGAAATTTACATTCACATAGAACcatcacaataaatacattgcaaccccaaaaatagcacaaatattacaaatcatCAATAAAATACTCTTTTAGTTTACtctacaatatatttaatacgtacaataattttgacccgtatcaaatatgaaaatatctaATCGACATGAAAATCTATTCTATGATTTTACTGTGCACACTTTATGcattaataaagttaatatatCATTAATGTTCATAACAGCAGTAAGTTAGGCCACTGTAGTCAAAATAGATCATATTAAGCCATATCAAATAGAACCATTTAGCTGTTTGGCTACATTTGTTGGATCATAGAATCTGAAATATTCAGTGATAACGATAAGCATTTTGGCATTTGGCATTcatattcattaaagaaaaaccaaaaatcTACATATATGAAACTCGAATGAACAGCTCCTTACTTTACGTTAATAAATATGCGTAATTCCTCACATGGCAAAATGAAGCTAAATGCAGCGGGAAACAGAATCGGAGAGAGCATTCCTGAATACGTAGCTTAACGCGAAGTAAACgtcgaaaaaataaaaaaaggaatagcCCATTTGCGAGTCGGTATTGAGCCCCACGTGGTACGATCACTCCGTATGAGAGTAAAAGTTCGCAACGGAACTGAATGCACGCAATAAATCGCAAAGTCGCGCTAGAAAGGAACACAGTTTGATATGTTGGTAACCGTACAGTATGCGTGTTGTTGGCACATATTCAAAAGAAACAGACTTTCTCCAACAGACCCTGGATAAAAAGGCAGTCACTTCAAGAGCTCGACAAGGCGCCAATGCTACAAAACTCCCAGAAAGCTTTCCCCACAGCACCACGCACGGACCAGGTAAGCAAATACGCCGTCGGataacgaaaaaaaaagaaataaagaaaagaaaagatggtTAGTTTCATCAAGGCCATTATTCTGGGCTCATGCAGTGCTACTAAAGCATGTTTTCGCAACATATCTTCGACACTTTTCACCCTCGGTTGTGTTTTTCCAGTAGGCATGCATTAGAGACACAAATCAGTTATCAAATAGAGCGACGTGACAGAATTACGGCATGCTGAGAGGGACATGCAGAACGGCATGCTTGAAGCCAAACTTCTTTTCGCTAGGCATCATGGGAAATCTATCAAAGATACAGTAATAGCACGAAAAGGAAACCAAAAAGATCGTTCTGAAATCCGAAATGAggctcgtgaggctttcccaacCCAGAGCGGGTTTGGGACGTCTGCATGCTCTGAAACAGATGCACTAAAATCCAGATGTTTAACCTAAGATCTAGAGAGCACATGACACATCCAGCACTAAAATATCATGCATGTTCAACCGCGTGGTAGAGATCGTTCCGCAAGCACAGTGAGAGATGCTACCGTTGATAGGAGAATCTGAAAGCGAAGTGCCACCGCCGACAAAACGGATGCggaataaatgtatattaagcCATTTGATCGCACACTGGAAGCCAATTTGGTTGCTTTTTGCAAATAGCATCGTGGCGGCGGCCTCGATTGTGCTGGCTTCTCAGTCGTTTCGCTGTATCTGACGCAATGGGATCGGTTGTCGCGTTATTACTGGAAAGGATATCCCAGAGGGCAAAGGGCAGCAGCAAGTGCATACAGATGTTTTGTCCAAGCACCAAGTGCGTACACACATCGCATACAGGAAAACTGTGCTGATTCAACCCACGCAAAGTTAAACATTTACCCACGTCACAGACTCGACCGACTTTCTGTAAATGATTACAAAACAGGATAGCGTTAGCATTCGCTAGTAAATCACGGCAGTCTCTGATTCACTGCGGTTGTTTAGTACTTCTGCCTCTCTGCGACCGCAGACGAGGGCTTGAAACCCGAAGAGCTGGGAATAGCTTTGCTATCAGGTCTGTAAACCCGTGACGTGTTCTTCATGTAAACAATTTATCCGAAGCGGATCTCAATATGAGCAACCAGCTTTTCCTTCGTCTCgctgggggggaaaaaaaacccccgACACGTCTCAGAAACTGGCCTGACTCAGTCTCGTACAAAATACAGCGCTGTTTTAAACGAAACGTTTGGTCCTCACCGCTCACATGTTCAAAATATTCATCGCCGTGGCATCTCTTGACATTTTCAGATGcaagataacacacacacactcacacacacacacacggtgggTGTCTCCTCGGCTGGTGTGAAGCTGCCTTTTGCAGTAGATCGCATGCTCCCGTTTAGGAGACCCTGATATCCTGTTGGTCGGGGAAGACTCATTAAAACACACGCATACGTGCACACAGAAAGACATACATGCTTATTATGTACTTGCGTGAAGGGGGAGGGCCTTTCTCGGTTTGGCACGTTTGAATGCGCAAAGAGTGTCTCGTCTCTCCTCGCTTTTTTGTCTCGCTTCTTACCTTGTGCTGGGTTTCCCTCCCTGCCTCTGATTTACTAATGCATCGATTGATCACCGTGGAACCCGTCGTCTTGGCGATCACACCTCCATCTCCATGTCGACGGATACAGAGGGCAGGTACAGAATGCTGTTGTTCGGGGTGCTGACGTGTCCTACGGTGTGACTTTTCACCCCGTAGCTGCTAACAGCGGGCGCTGATCCCAGTTTGGTCCGGATGCAGGGGCTCGAGCCGCTCTCGGGGCTCTTGGATCGCGCGTGCTGCGTGCCTTGCGAGCTTCGGCCTTCAAGAAAGTAGGTGAGCATTTGACCTTTGCCCTTCACGCTGACCTGGCCACGGCACTGGAAGTGATAATAACCGGAGAGTAGGCGGAAGACGTCCTCGGTCACCTGGGATGAGGAGGCAGATGAAGTCAGTGCTGTCCATTCTGCTGGCGACGTTGACCGTGTTTCCCCAGATGTCGTACTGAGGCCTGCGAGCCCCGATTACACCTGCAACTACTGGACCCACGTTGATACCTGATCAACAAAAATGATCAAGTAATTCGATTTAGTCCCTTTATCTGATATGTGTACATGTAAagcaaactctgtttaaaaatgaaggttTGTTAAGGTTTTTTAACGtttaattcgattttttttattgtcacatATGCACACCAAAGCTATGTTTTTTTGatcaataaaacagtaaaaacataaatgatattgtaaaaaaaaaattacatgattGTTCTTGGTCTGGaggtattaaaaataatttctaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202725 lncRNA downstream 40041 9404130 ~ 9404541 (-) True G137255
TU202723 lncRNA downstream 43373 9400382 ~ 9401209 (-) True G137253
TU202720 lncRNA downstream 51353 9392950 ~ 9393229 (-) True G137250
TU202599 lncRNA downstream 115861 9325653 ~ 9328721 (-) False pcsk9
TU202579 lncRNA downstream 191612 9252712 ~ 9252970 (-) True G137132
TU202742 lncRNA upstream 11594 9459505 ~ 9528536 (-) False G137267
TU202743 lncRNA upstream 11594 9459505 ~ 9481554 (-) True G137267
TU202745 lncRNA upstream 11594 9459505 ~ 9536077 (-) False G137267
TU202821 lncRNA upstream 248372 9696283 ~ 9697334 (-) False si:ch73-74h11.1
TU202777 lncRNA upstream 249751 9697662 ~ 9751337 (-) False si:dkey-5n18.1
XM_043220109.1 mRNA downstream 62589 9377049 ~ 9381993 (-) True ftr85
XM_043220382.1 mRNA downstream 85041 9357408 ~ 9359541 (-) True si:dkeyp-51f12.2
XM_043220048.1 mRNA downstream 89298 9339363 ~ 9355284 (-) True si:dkeyp-51f12.3
XM_043220047.1 mRNA downstream 92944 9339363 ~ 9351638 (-) False si:dkeyp-51f12.3
XM_043220049.1 mRNA downstream 105362 9335931 ~ 9339220 (-) True bsnd
XM_043220125.1 mRNA upstream 15823 9463734 ~ 9477418 (-) True igfbp3
XM_043220088.1 mRNA upstream 61755 9509666 ~ 9545061 (-) False si:ch211-191a24.3
XM_043220089.1 mRNA upstream 61755 9509666 ~ 9545039 (-) False si:ch211-191a24.3
XM_043220087.1 mRNA upstream 61755 9509666 ~ 9544809 (-) False si:ch211-191a24.3
XM_043220086.1 mRNA upstream 61755 9509666 ~ 9544809 (-) False si:ch211-191a24.3
XR_006247224.1 other downstream 109521 9330137 ~ 9335061 (-) False pcsk9
XR_006247226.1 other downstream 165617 9255548 ~ 9278965 (-) False bloc1s2
XR_006247225.1 other downstream 165617 9265372 ~ 9278965 (-) False bloc1s2
XR_006247227.1 other downstream 165617 9265372 ~ 9278965 (-) True bloc1s2
TU202481 other downstream 622863 8821154 ~ 8821719 (-) True G137056
TU202840 other upstream 490054 9937965 ~ 9938877 (-) True G137330
TU203003 other upstream 1119386 10567297 ~ 10570737 (-) True G137451
TU203048 other upstream 1274010 10721921 ~ 10724069 (-) True G137469
unassigned_transcript_2506 other upstream 1484651 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 1684715 11132626 ~ 11136588 (-) False LOC122324412

Expression Profile