RNA id: TU203028


Basic Information

Item Value
RNA id TU203028
length 854
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G137461
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 10609843 ~ 10611455 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCCTCAGAGAGCAAAACtgctgtggctgtgtctggagAGCAAAAACAGCCAATATAGTCTCTAAAACGACTGTACAAACATCTGCTGGGCTACCAGCTGTTCAGAGCGGATTGCATTGCAAACTTAACAGGGAAAGTGAGAGGTGGTGGTTCATAAACTACTCTCCGCGGGAGTTTTCCTCATGAATTTGTATGTGCCTCCAGATGTGTGTTTGAGCTCTGCGATGCAACAGCTGACCGAATAAATAACGGAAATGGAGCAATGATATCCAGACTCGAATCATTCTTAGggattttaataaatcaaatctcTCCTGTGACGTACAAACAGCACATTACATGTCCCACCAGAGACAGTTATATATTGGATCACTTCTACACAGCAAGGAAGGATGCATATCACTCAGACCCATGTGCAGCTTTGGGGCTCTCCGATGACTGTTTGGTTTATCTTGTACCGCCCTACAGGCAGAAACTGAAATCAGCCAAACCTGTTATAAGGACTGTTAAAACATGACATAATGAAGCAGACTGGGATCTACAAACCTGTTTCGGCCTCACTAATTGGAGTGTTTTTGAGTTTGTGGCAACCTGGACGATAAAATCCTGTATATCCAGGCCAGGAACAGACTAACAAAGGATATCAGAGTGGCTAAAGAGCTCTCAGCCAACAATCCGGCGTCATGTACAAGACACCACCCAACAGTCTGTGGAGAATCAACAACTGGCTGATGATCTGAATTTGCTTTACTTTCAATTCGAAAAGGTCTACCACCAACCATCTGCTCTGATCTGCACCCCACACGCACAGCTCTTACACTCTGCATTCCCACAATTCATTATGCTATTATAA

Function

GO:

id name namespace
GO:0004549 tRNA-specific ribonuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203000 lncRNA downstream 47382 10556745 ~ 10562461 (-) True G137448
TU202991 lncRNA downstream 151053 10458253 ~ 10458790 (-) True G137441
TU202868 lncRNA downstream 331657 10277939 ~ 10278186 (-) True G137356
TU202860 lncRNA downstream 374537 10232024 ~ 10235306 (-) True G137348
TU202858 lncRNA downstream 401258 10208074 ~ 10208585 (-) True G137346
TU203030 lncRNA upstream 7480 10618935 ~ 10620941 (-) True G137462
TU203035 lncRNA upstream 19266 10630721 ~ 10631264 (-) True G137465
TU203042 lncRNA upstream 22395 10633850 ~ 10634771 (-) True G137466
TU203047 lncRNA upstream 107339 10718794 ~ 10720911 (-) True G137468
TU203171 lncRNA upstream 141392 10752847 ~ 10753258 (-) True G137559
XM_043219416.1 mRNA downstream 59270 10494086 ~ 10550573 (-) False cdc42bpb
XM_043219415.1 mRNA downstream 59270 10494086 ~ 10550573 (-) False cdc42bpb
XM_043219414.1 mRNA downstream 59270 10494086 ~ 10550573 (-) True cdc42bpb
XM_043219417.1 mRNA downstream 59272 10494086 ~ 10550571 (-) False cdc42bpb
XM_043219418.1 mRNA downstream 59273 10494086 ~ 10550570 (-) False cdc42bpb
XM_043219039.1 mRNA upstream 9725 10621180 ~ 10627044 (-) True enpp5
XM_043219280.1 mRNA upstream 26771 10638226 ~ 10648648 (-) False ccm2
XM_043219279.1 mRNA upstream 26771 10638226 ~ 10648647 (-) False ccm2
XM_043219278.1 mRNA upstream 26771 10638226 ~ 10648647 (-) True ccm2
XM_043219281.1 mRNA upstream 26771 10638226 ~ 10645293 (-) False ccm2
TU203003 other downstream 39106 10567297 ~ 10570737 (-) True G137451
TU202840 other downstream 670966 9937965 ~ 9938877 (-) True G137330
XR_006247224.1 other downstream 1274782 9330137 ~ 9335061 (-) False pcsk9
XR_006247226.1 other downstream 1330878 9255548 ~ 9278965 (-) False bloc1s2
TU203048 other upstream 110466 10721921 ~ 10724069 (-) True G137469
unassigned_transcript_2506 other upstream 321107 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 521171 11132626 ~ 11136588 (-) False LOC122324412
TU203250 other upstream 563739 11175194 ~ 11182169 (-) False LOC122325476
XR_006247255.1 other upstream 755468 11366923 ~ 11368490 (-) False gsx2

Expression Profile