RNA id: TU203030


Basic Information

Item Value
RNA id TU203030
length 1517
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G137462
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 10618935 ~ 10620941 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAATTCACAGGCAAATCTTTAATAGTTGCAAAAATACAAGGGGAACTCGTGTGCATTTATGCTCTATAATCTAAGAAACTCATGCAtacaaacaacagcaacaattCATCAATAGAGCTGGTGagaaaagactaaaataagAGGCTTTGAGCAGATCGCTAACCCAGGCCTACAGCTGAAGAAAAGGCCAAAGGAGGTGAAAGGCATGCGTCTGACAAAAAGAAGCTGAGCAATATGTGAAGAGGCAACTGAAGCTTTTTGGTTTCATCTTTAAATGGCATCAATATCAATGTCCTCCTCCTCATGGTCCACCTTCTCAGGTTTTGTGGTCTCCATTTTCAACTCGCGGGCAGAGGAGGAATACACCACCTAGAGAAGATGGAGACATTGTATTAAGAAATGTTGAATCAATTGGGATCTAAATATCCTAGTTTTGTAATTGTGGCTTATTTTTACCTCAAcattgtcatcatcatcatcttcctcttcctcactgCCTTCACTCTCCTCCTCTGCCTCCTTGAGCCATTTAACAAAGGGCTCTGCCTTGGCATGAATCTCTTTTGCCAACTCTTTGGAGACATACTTCTTAGACACCTATAGCAGAAACATCACAAACAGGTTTAAACTGCAGAACACTACACTAGTCAAGTGTGCTTGCCTCCATCAGACCCTGGGCTCTCCAGCAGCATGTAGGTCAGATGTTACCATATTACAACCCCCCTCCAACTCTCAGGCTAAAATGACATGGGTTGCCTAGCAACAGGTAACTGACCACAACATCCATTCATCTGCCTGTTTTTCCTTAAAGAGCTGAGATCAGAACTGGATTCATgcatataaactttttttttaatctgagcCGACTATGACCTACATCGTTTCATATGAGAGTCTAAAAGGTCAAGTCTAGAGGCTGTGTGTCGGCGGGTTACCTTTTCAGCCCACGCGAGTATGACATCTTCCTCCAGCAGATCAGCGTCATACAGGTCTTTGAGTATTATGGGGACTCTGGGTAAGAGCTGAGTCTGATGAAGCTTCACTAGGCATTCAAAGCCACCTAGAAGATACTTCTGGGCTTTCTTATTGTTGTGGCAGACCTGAGGAAGTGACGCTTGTACTTCTTGATCTGTTCACGGATGTTCTCATCAAAGAGCAGCTCGCTCAGGATCAGAGGACCCATGGCCTTCACATCCAGCCTTTCAGCCTCAGCCAAGATCTCTTTATCTGCAGAGTCAATCGCTCCACTGTCTTTCTTTTCCTGAAGGGCAAAAAAAATGGAGTTGAATAAGGAGAGTGTCTATACGTAGAGCAATTTTTCCCAAATTATCAGTGCAATTTTAAGACAACCACCTTCACAAAGTTGTAAAATATGTTGACCCTCTCCTCCAGGGATTTCTCCAAGTCATCAGTGAGCGTGAGACCCTTGGCGTGCTCGCTGATCTCCTCCATCCTGCGACGCTGGGCCTCTTCTGTGGTCTCCTCAGCCCAGtcttcatcatcgtcatcatcccC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203028 lncRNA downstream 7480 10609843 ~ 10611455 (-) True G137461
TU203000 lncRNA downstream 56474 10556745 ~ 10562461 (-) True G137448
TU202991 lncRNA downstream 160145 10458253 ~ 10458790 (-) True G137441
TU202868 lncRNA downstream 340749 10277939 ~ 10278186 (-) True G137356
TU202860 lncRNA downstream 383629 10232024 ~ 10235306 (-) True G137348
TU203035 lncRNA upstream 9780 10630721 ~ 10631264 (-) True G137465
TU203042 lncRNA upstream 12909 10633850 ~ 10634771 (-) True G137466
TU203047 lncRNA upstream 97853 10718794 ~ 10720911 (-) True G137468
TU203171 lncRNA upstream 131906 10752847 ~ 10753258 (-) True G137559
TU203172 lncRNA upstream 133016 10753957 ~ 10754191 (-) True G137560
XM_043219416.1 mRNA downstream 68362 10494086 ~ 10550573 (-) False cdc42bpb
XM_043219415.1 mRNA downstream 68362 10494086 ~ 10550573 (-) False cdc42bpb
XM_043219414.1 mRNA downstream 68362 10494086 ~ 10550573 (-) True cdc42bpb
XM_043219417.1 mRNA downstream 68364 10494086 ~ 10550571 (-) False cdc42bpb
XM_043219418.1 mRNA downstream 68365 10494086 ~ 10550570 (-) False cdc42bpb
XM_043219039.1 mRNA upstream 239 10621180 ~ 10627044 (-) True enpp5
XM_043219280.1 mRNA upstream 17285 10638226 ~ 10648648 (-) False ccm2
XM_043219279.1 mRNA upstream 17285 10638226 ~ 10648647 (-) False ccm2
XM_043219278.1 mRNA upstream 17285 10638226 ~ 10648647 (-) True ccm2
XM_043219281.1 mRNA upstream 17285 10638226 ~ 10645293 (-) False ccm2
TU203003 other downstream 48198 10567297 ~ 10570737 (-) True G137451
TU202840 other downstream 680058 9937965 ~ 9938877 (-) True G137330
XR_006247224.1 other downstream 1283874 9330137 ~ 9335061 (-) False pcsk9
XR_006247225.1 other downstream 1339970 9265372 ~ 9278965 (-) False bloc1s2
TU203048 other upstream 100980 10721921 ~ 10724069 (-) True G137469
unassigned_transcript_2506 other upstream 311621 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 511685 11132626 ~ 11136588 (-) False LOC122324412
TU203250 other upstream 554253 11175194 ~ 11182169 (-) False LOC122325476
XR_006247255.1 other upstream 745982 11366923 ~ 11368490 (-) False gsx2

Expression Profile