RNA id: TU203525



Basic Information


Item Value
RNA id TU203525
length 897
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G137822
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11838470 ~ 11839366 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAAGGATTTCCAGTCACTCTGCATTCAAGGCGGATAGGGCTTCCTTCTGCCACCTCTTGGCTCTTCAGTTTCTGGGTGAAGTGTGGAGGACTCATGGGTCCATCTAGACTAACACCTCTGCCTTGATGTTCATCTGACCCAACATCGGCCTGAACCTGGGGCATACCCTCCTGCTGGGGCTcagaggaagatgaagaggatgaaGGTGGCTGAGCCTGCAGCATGGCCAGCCGCTGGCTCCTTGGAGACAAGTAGCCACTGTCGGGTGAAGAAGAGTCTTCATCATTCTGCTGATCCACACGCGTGGAGCCTTTGAAGATGGACGAGAGCTCCTCAATGAAGGTAGCAGCTCGGCTGCAGAACTCAGTAGCTGAAGCAGCTCTTTCATTGAGCTCCAGGCCTCCGTGGACCAGCCGGGGACGGTCCTGCTTATACACCGGTGTGATGGATTTTTGGCAGACAAACTTTTCGGGTGATTCAGGCACAGCACAGGGCCTACTGAGCGGCATGCTCTGATTGGATGTGACTTTACCTGATGTGGCATCAGTTGACTGAGATGCTGAATCTTGGAGAGTGGGGTCTTTGGTTTCTGAGTAAAGAGGCAGGTGCTGTCTGGGAACGAGGGGTTCATCTTGGTCATTTGGGTCATCTGCGTCACTCATGGCTTCTCGAGCCAGGTCCAGGCTGAAGCTGATCTCGTCCTGGCTCAGGAAAGCAGAAAGTTCTGGAAAGTCCCCGTCCCCACTCTCTAACTCAGCCATTGAGTCCAAGTAAACCTCACCATCAAGAGGTGGCAACGAAAGCATGCCCCCATCCCCCTCCAAGGACACGCCCCCTTGAGGACACGCCTCCTTCATTAGCAGAGAGAGGGGGAGTGTGTCATTCCAGCTCCCGTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU203524 lncRNA downstream 1754 11836106 ~ 11836716 (-) True G137821
TU203482 lncRNA downstream 40519 11792550 ~ 11797951 (-) True G137784
TU203514 lncRNA downstream 66810 11771269 ~ 11771660 (-) True G137812
TU203474 lncRNA downstream 87298 11717238 ~ 11751172 (-) True G137779
TU203475 lncRNA downstream 112236 11717238 ~ 11726234 (-) False G137779
TU203535 lncRNA upstream 53901 11893267 ~ 11893889 (-) True G137831
TU203664 lncRNA upstream 105892 11945258 ~ 12013976 (-) True G137916
TU203678 lncRNA upstream 196112 12035478 ~ 12036122 (-) True G137930
TU203708 lncRNA upstream 214411 12053777 ~ 12194359 (-) True G137944
TU203682 lncRNA upstream 356163 12195529 ~ 12197425 (-) True G137932
XM_043219021.1 mRNA downstream 4778 11824261 ~ 11833692 (-) True anapc4
XM_043219020.1 mRNA downstream 4778 11824448 ~ 11833692 (-) False anapc4
XM_043219024.1 mRNA downstream 15638 11804674 ~ 11822832 (-) False slain2
XM_043219029.1 mRNA upstream 68194 11907560 ~ 11910735 (-) True cbr4
XM_043220525.1 mRNA upstream 220309 12059675 ~ 12064023 (-) True LOC122325482
XM_043219074.1 mRNA upstream 338534 12177900 ~ 12181346 (-) False LOC122324547
XM_043219073.1 mRNA upstream 338534 12177900 ~ 12181346 (-) True LOC122324547
XM_043219075.1 mRNA upstream 342413 12181779 ~ 12185425 (-) True LOC122324548
TU203468 other downstream 155152 11682405 ~ 11683318 (-) True G137773
XR_006247366.1 other downstream 208109 11630241 ~ 11630361 (-) True LOC122325627
XR_006247365.1 other downstream 208629 11629720 ~ 11629841 (-) True LOC122325626
XR_006247367.1 other downstream 209221 11629128 ~ 11629249 (-) True LOC122325628
XR_006247255.1 other downstream 469980 11366923 ~ 11368490 (-) False gsx2
TU203734 other upstream 379397 12218763 ~ 12219639 (-) True G137967
TU203715 other upstream 383444 12222810 ~ 12224270 (-) True G137949
TU203701 other upstream 406856 12246222 ~ 12247010 (-) False mdn1
XR_006247291.1 other upstream 1586109 13425475 ~ 13436351 (-) False cracd
TU204189 other upstream 1825140 13664506 ~ 13692007 (-) True G138285

Expression Profile