RNA id: TU204126



Basic Information


Item Value
RNA id TU204126
length 730
lncRNA type sense_over
GC content 0.40
exon number 3
gene id gtf2h5
representative False

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 13547276 ~ 13548591 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GAAGACCTTTGTTAGTAGACGGTGGACGCTAGGGCTAAAACACACTGACAATTGACAGATAAACAAAAATCACAAAACTTAAAACCGAAGAACCGGAAGCGTTTACACGTCCCTTCTAAAATGGTTAATGTCTTGAAAGGAGTTCTCATTGAATGtGACCCAGCTATGAAGCAATTTCTTCTATATCTGGATGAAACGTCGGCACTGGGGAAGAAATTTATCATCCAGGATTTGGACGACACGCATGTTTTCATCCTAGCCGGAGTTGTGCAGATTCTCCAGGAGCGAGTAGGAGAACTGATGGACCAGAATTCATTCCCCATCACCCAGAAATAAATGTCTGAATCTGACAGCAGACCTTACAATCTGTGGGAGCAGATGGATGTAGAGATTCTTTCTGCGCAattgcacaaacacagatgTAACTGAAATATATAGATGACTGGCTACCAAGATGATGCCTGTTATCCCTGTTTTAGTTTGACTGTGATGCATACATTATATGCTTTACGTCGCATATGTTTCAAAGACAGCTTCTTGAATCTTTGCTCTGTTTTGCCAGCATGGTCAATGAATTGTGTTTTGCGCACAAGATGGAATTAGCTGCAGAAAGGAgcgtttaatgtgtttttcagcatttcacaGTTTGTACACAAACTGAAAGCAGATGGTTGATAACCGTGTGATTTCTATACatgcatcaaataaaaaactttaaaatgtgattttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU204115 lncRNA downstream 32143 13514765 ~ 13515133 (-) True G138232
TU204100 lncRNA downstream 49250 13495682 ~ 13498026 (-) True G138221
TU204096 lncRNA downstream 68252 13478772 ~ 13479024 (-) True G138217
TU204024 lncRNA downstream 153681 13388921 ~ 13393595 (-) True G138159
TU204027 lncRNA downstream 155933 13385970 ~ 13391343 (-) True G138162
TU204217 lncRNA upstream 216893 13765431 ~ 13767824 (-) True stx11b.2
TU204248 lncRNA upstream 282039 13830577 ~ 13832060 (-) True G138335
TU204268 lncRNA upstream 301402 13849940 ~ 13850174 (-) True G138351
TU204354 lncRNA upstream 392690 13941228 ~ 13999349 (-) True G138399
TU204368 lncRNA upstream 396722 13945260 ~ 13945737 (-) True G138407
XM_043219189.1 mRNA downstream 232 13538787 ~ 13547044 (-) False si:dkey-12h9.6
XM_043219187.1 mRNA downstream 234 13538787 ~ 13547042 (-) True si:dkey-12h9.6
XM_043219188.1 mRNA downstream 236 13538787 ~ 13547040 (-) False si:dkey-12h9.6
XM_043219183.1 mRNA downstream 21003 13516657 ~ 13526273 (-) True capn3b
XM_043219195.1 mRNA downstream 36758 13508652 ~ 13510518 (-) True churc1
XM_043219185.1 mRNA upstream 120 13548658 ~ 13555425 (-) False serac1
XM_043219184.1 mRNA upstream 120 13548658 ~ 13555425 (-) False serac1
XM_043219186.1 mRNA upstream 120 13548658 ~ 13555421 (-) True serac1
XM_043218696.1 mRNA upstream 7388 13555926 ~ 13559395 (-) True myct1a
XM_043219863.1 mRNA upstream 122566 13671104 ~ 13683267 (-) True esr1
XR_006247291.1 other downstream 110925 13425475 ~ 13436351 (-) False cracd
TU203701 other downstream 1300266 12246222 ~ 12247010 (-) False mdn1
TU203715 other downstream 1323006 12222810 ~ 12224270 (-) True G137949
TU203734 other downstream 1327637 12218763 ~ 12219639 (-) True G137967
TU203468 other downstream 1863958 11682405 ~ 11683318 (-) True G137773
TU204189 other upstream 115968 13664506 ~ 13692007 (-) True G138285
TU204531 other upstream 895054 14443592 ~ 14445844 (-) False LOC122324589
TU204892 other upstream 1444561 14993099 ~ 15015183 (-) True srsf5b
TU204893 other upstream 1444561 14993099 ~ 15015183 (-) False srsf5b
XR_006247368.1 other upstream 1741737 15290275 ~ 15290410 (-) True LOC122325630

Expression Profile