RNA id: TU204494


Basic Information

Item Value
RNA id TU204494
length 1602
lncRNA type read_through
GC content 0.37
exon number 2
gene id G138502
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14269723 ~ 14467414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACAGAAAAATTCCTAATGTTCTTTCAGAAAAATGAAATAGCCACACAAAGAATTATAAAGAGGAaacattctttttattcataactTTATGTTAATGAAAACTTAGGAGTctttacatgatttttaaaaaggataaaaaCTGTACAATACAAAGCAGGAACACTGATAACATGGCATAGACATTGAAAAAGTCTAAATGCTTGGCAAATCTGCTAAACTTAAATTATTAGTAGAAATTGCAGACtaacaaaacaaagagaaaataattaaatcaattttataaaGAACAAATAGAAAATATCATGCAGCAACTTGGAGAAAAAAAGCCTGagtctttttctctgtttaaataaagaatCATCCAACAGCGTAAACAAGAAAGaattttaagatgtaaaaaaatagcCACATTTTCTACTTCAAATCCCAATAATCTCTtctatttgtttctttatgaGAAACAGCAGTCACACTTCTCTCCAGAGACACTTGAAGGAttaacatgacaaacaaaaatcatCAAACAGTACAGGCTGAAGATAAATCACGGGACACAGTGAGGAGAAGGTCCAGTGCTGTGATATTGTCAACAGATGAAAGCCGTTTGTATATCTGAACATATTCATTTTCAGTGTAGAAAGGCATAATCTTTTGAAGTTCAGGTAGATAAAGTGAATTTGTTTACGTTAATAGAAACCAGCTTAACGCTGGATGTTGCATGATCAGAGAAGAACAGACACATGCATACGTTACAGTATGACGCATACAGCACACACTGAAATTGAAGTACAAACTCACTTCGGTTTGATGTCCTGAGAAGTGTTTGAGACGAGCTCCAATTTTTGATTTGCCACCAGCTGCACCAATCAGGTAAAGTAGTAGATCTGTACCAGAGAGCCAATCAGCATGCAGAGCGACTGTAACTAGATGAGACAGATGACAGTGCCACTGATTCAGCATCTTTATCCAGTCGGGGCAGAGATTTCAAAATGTGATTTCTAATTGCGGTCatttagatattagaaaagGCAATAGTACGGGgagttttttgtgtttaatacttaaaactatattttacacACTTTAGCtcttataaatacattatacacTTCATTGCAAtgcaaaatactttttcaaaatgtacttGGGAGAGTTGGTCTCAATACTAGCACCAATCATAAAACAAAGATAGTtcttgggatttttttttttttttggtttaaggCACTTCCTGGTAAAGTTTAACGAAGATCTCAGGACACGGTCTTGCTCTTGTTGTTTTCAGTCTCTATGTTTCTCATCATTTCTGGGAGTTTCTAACCACTCGACGTCCTCACTTGTTGAAGGAcagtctcaaaaaaaaaaaaaacagctttctaACTTGCTAGCTTGCCAACAATGTCCTGTTTTGTTCTCTTCTAGACCTCCATTTCCTGTTGTCCGCTCTGTCCTGGGATCGTGGGCACAGCGATATCGAAGCAGGTTTCCATCATCACACGAGACTTGCATAGATTGACACAAAATTCCAGGTCTCCTGTGGCCTGAGCCAGAGCTTCCAGGTAGTCCTGCGACTCCTGGTCCAGATCTGGGTCCACATCAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204437 lncRNA downstream 71961 14197398 ~ 14197762 (-) False prph2lb
TU204431 lncRNA downstream 86563 14182209 ~ 14183160 (-) True G138463
TU204376 lncRNA downstream 236267 14031165 ~ 14033456 (-) True G138415
TU204366 lncRNA downstream 278307 13982174 ~ 13991416 (-) True G138405
TU204356 lncRNA downstream 315836 13948159 ~ 13953887 (-) True G138401
TU204567 lncRNA upstream 57318 14524732 ~ 14525023 (-) True G138562
TU204596 lncRNA upstream 111287 14578701 ~ 14578901 (-) True G138579
TU204663 lncRNA upstream 326081 14793495 ~ 14793709 (-) True G138627
XR_006247215.1 lncRNA upstream 371643 14839057 ~ 14843736 (-) True LOC122324712
TU204880 lncRNA upstream 529729 14997143 ~ 15003189 (-) False max
XM_043218835.1 mRNA downstream 64117 14201457 ~ 14205606 (-) True LOC122324437
XM_043218764.1 mRNA downstream 71195 14193733 ~ 14198528 (-) False prph2lb
XM_043218765.1 mRNA downstream 71195 14193733 ~ 14198528 (-) True prph2lb
XM_043219703.1 mRNA downstream 76586 14188793 ~ 14193137 (-) True serpina10a
XM_043220486.1 mRNA downstream 101124 14163287 ~ 14168599 (-) True asb2a.2
XM_043219819.1 mRNA upstream 61109 14528523 ~ 14532800 (-) False zbtb25
XM_043219820.1 mRNA upstream 61109 14528523 ~ 14532580 (-) True zbtb25
XM_043218679.1 mRNA upstream 79257 14546671 ~ 14549563 (-) True zgc:153157
XM_043218589.1 mRNA upstream 112033 14579447 ~ 14603338 (-) True syndig1l
XM_043218588.1 mRNA upstream 112033 14579447 ~ 14603337 (-) False syndig1l
TU204189 other downstream 577716 13664506 ~ 13692007 (-) True G138285
XR_006247291.1 other downstream 833372 13425475 ~ 13436351 (-) False cracd
TU203701 other downstream 2022713 12246222 ~ 12247010 (-) False mdn1
TU203715 other downstream 2045453 12222810 ~ 12224270 (-) True G137949
TU203734 other downstream 2050084 12218763 ~ 12219639 (-) True G137967
TU204892 other upstream 525685 14993099 ~ 15015183 (-) True srsf5b
TU204893 other upstream 525685 14993099 ~ 15015183 (-) False srsf5b
XR_006247368.1 other upstream 822861 15290275 ~ 15290410 (-) True LOC122325630
XR_006247360.1 other upstream 1254632 15722046 ~ 15722265 (-) True LOC122325621
XR_006247362.1 other upstream 1255136 15722550 ~ 15722769 (-) True LOC122325623

Expression Profile