RNA id: XM_043219123.1


Basic Information

Item Value
RNA id XM_043219123.1
length 2434
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC122324589
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14441533 ~ 14445925 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAAAGCGTATCGCGGGCTAAAGTTGACCCATGATCCTCATCAGactacaacaaaataaaatgctaactGGTCTCAGTGCAGGTGTTCCTACGATATGCGAGTAAATGGCACAgaTCCTTCCTGTTTGCAAAGATGGAGGCAGAGGGAACGTCGGTCCCGCGCTCACTCTCTGCTGAGTTTGAGGGGTCCTTTGCCTATCTGACCGTGAGAGACCGACTCCCAACCATACTCACAAAAGTAATAGACACATTACACCGCAATAAAGACAATTTCTTCAAAGAATATGGAGAGgagggGATCCAGGCAGAGAAGACGGCCATCTCTTTCCTGTCCAGGCTGAGGAATGAACTGCAGACAGACAAACCTGTGCTGTCTCTGACTGATAATGCAGAGGACTCCGAGGCCTGGAATGAATACTTGCGAAAACAGCAGGACCTGATGGAAGACGGGAGGCCTGTCAGCTGGTTCAAGTCACCATGGCTCTATGTGGAGTGTTACATGTACCGGCGGATCCAGGAGGCTCTGTATATGAAtCCACCGATGGATAAGTTTGACGCGTTTAAGGAGGGAAAGACACAAAGCTTCTTCCAATCTCAACAAGCCATTAAATCCCTCTGCACATACCTTCAGGAGCTCATCACCAACATGGAGAACATGACCGAGATTCAGCTGCGAGACAACCTTCTCAAATTACTCCAGGTCTCTCTGTGGGGAAACAAGTGTGATCTGTCCATCTCTGCCGGTCAGGACAACTCTCAAAAGTCCAGTCCCATCGATTCTCTTCCTGATCTCCAGCGCTTCATCCTCGTGGATGACTCCAGCACGGTTTGGTCAACACTGGTTGCTTCTCAAGGATCAGGATCATCTGGGATGAAGCATGCCAGAGTGGACATTATTTTAGACAATGCTGGTTTTGAGCTCGTTACCGATCTAGTCCTTGCTGACTTTCTTGTTTCTGCAGGACTAGCCAAGCAGGTCAGATTTCATGGCAAGTCCATCCCATGGTTTGTCTCAGATGTCACCAAACAAGACTTTGAGTGGACCATCATGCAGACCGTGGCAGCCAATCACAAGTGGATGTCAGCCAGCGGTGTCCAATGGAAGCATTTCATGAAGGAGGGCACATGGTCCTACCATGACCACGCTTTTTGGACCTTGCCCCATGAGTTCTGTGACATGGCGGTGGATGCAGCTGATCTCTACAGCACTCTCCAGGGCTCTGATCTGATCCTCTTCAAAGGAGACCTTAACTACCGGAAGCTTACTGGTGATAGGAAATGGGAGCACACAGTTGCGTTTGATCAAGCGCTGAGGGGGTTCCAGCCTGCCCCTCTCTGTAGTCTCAGGACACTGAAGGCTGACGTTCAGGTGGGCttagagccaggccaggccgaGAAGCTCATCTCTCAGGATCCAGACTGGATGACTAACGGCAAATATGCTGTCATTCAGTTTTCCAGTCCACGCAGAAAACAAtagggtctttttttttaaagaaaagcgAGTCCTCACTAAAGAGGAAATTGTTGAGAATGAAGAGataaaggaataaaatgcaCTGAAGATGCTGGTTTAGTTACCAACATGCCAAACAAGTGTGGTGTTGCTTTCACTTTGCTtgtgtaaaagtttttgtttgaaaGCAAATTACATAATGAATCCAACCGATTCTGCATATCAAACACTGAAAATAGTCTTTGCTGACAACTgatcacagtatttttttttttaatatattttctgtttgcaCTGCTGATCTGTATTGTGTAAGTACAGTTACTTAAACACACAGATGTAAACgtggcaaaaaagaaaacatgataaaaatccaATGTGTTGTGTGGTAGGatacacagtaaaaaataatgaaactgaattttaaCTTCTAGTTAAAAGCTGATGACCAAAACACCTTCAGAATAGTGAAACAGGTATATGCATTTTGGGCTAAAAATGTgcagtatataattttttttcttcaaatgtaGTAATTTATGGGCGTAGCGTGGAGTGcataattgaaaataatgtataaagaataaaacaattcTAGCAGAGTGATGGCAATATGGAATGTATGAGGGTTTTGAATGTAGAGGGatgaaaaaagcacaaattcaCAATGATCTACTAATGTCATCATAAGGAAATGCTTTTTGCTTATTGGctgaaaatactgtaaaaaaatactggCCATACATATATCATCTCAGagagtttttgtttacacagttTGGATTGACTAGCACTTTCAAAGCAAGTTTACCAGgttttctggtgtgtgtttggatgAAAGCTTCACCATGATTTCTTTTAGCTTATTTATGAGCATGCTGGAAACGGATGAGAGTCAGGATATCGTGTATGTACTCATACttgttaaaatgctgttttgaaaatttaatgcAACTTAATAAAgattagaaaaacaaa

Function

GO: NA

KEGG:

id description
K23114 ARMT1; damage-control phosphatase, subfamily III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204529 lncRNA downstream 13281 14426959 ~ 14428252 (-) True G138537
TU204437 lncRNA downstream 243771 14197398 ~ 14197762 (-) False prph2lb
TU204431 lncRNA downstream 258373 14182209 ~ 14183160 (-) True G138463
TU204376 lncRNA downstream 408077 14031165 ~ 14033456 (-) True G138415
TU204366 lncRNA downstream 450117 13982174 ~ 13991416 (-) True G138405
TU204567 lncRNA upstream 78807 14524732 ~ 14525023 (-) True G138562
TU204596 lncRNA upstream 132776 14578701 ~ 14578901 (-) True G138579
TU204663 lncRNA upstream 347570 14793495 ~ 14793709 (-) True G138627
XR_006247215.1 lncRNA upstream 393132 14839057 ~ 14843736 (-) True LOC122324712
TU204880 lncRNA upstream 551218 14997143 ~ 15003189 (-) False max
XM_043219120.1 mRNA downstream 1743 14418442 ~ 14439790 (-) True LOC122324587
XM_043219121.1 mRNA downstream 7733 14429428 ~ 14433800 (-) True LOC122324588
XM_043218835.1 mRNA downstream 235927 14201457 ~ 14205606 (-) True LOC122324437
XM_043218764.1 mRNA downstream 243005 14193733 ~ 14198528 (-) False prph2lb
XM_043218765.1 mRNA downstream 243005 14193733 ~ 14198528 (-) True prph2lb
XM_043219819.1 mRNA upstream 82598 14528523 ~ 14532800 (-) False zbtb25
XM_043219820.1 mRNA upstream 82598 14528523 ~ 14532580 (-) True zbtb25
XM_043218679.1 mRNA upstream 100746 14546671 ~ 14549563 (-) True zgc:153157
XM_043218589.1 mRNA upstream 133522 14579447 ~ 14603338 (-) True syndig1l
XM_043218588.1 mRNA upstream 133522 14579447 ~ 14603337 (-) False syndig1l
TU204189 other downstream 749526 13664506 ~ 13692007 (-) True G138285
XR_006247291.1 other downstream 1005182 13425475 ~ 13436351 (-) False cracd
TU203701 other downstream 2194523 12246222 ~ 12247010 (-) False mdn1
TU203715 other downstream 2217263 12222810 ~ 12224270 (-) True G137949
TU203734 other downstream 2221894 12218763 ~ 12219639 (-) True G137967
TU204892 other upstream 547174 14993099 ~ 15015183 (-) True srsf5b
TU204893 other upstream 547174 14993099 ~ 15015183 (-) False srsf5b
XR_006247368.1 other upstream 844350 15290275 ~ 15290410 (-) True LOC122325630
XR_006247360.1 other upstream 1276121 15722046 ~ 15722265 (-) True LOC122325621
XR_006247362.1 other upstream 1276625 15722550 ~ 15722769 (-) True LOC122325623

Expression Profile