RNA id: XM_043218914.1


Basic Information

Item Value
RNA id XM_043218914.1
length 1808
RNA type mRNA
GC content 0.43
exon number 4
gene id max
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14997125 ~ 15003202 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGTGTGGAAGAGTCCGTTGATCTCGTTTCGTGTAAGCAGTGAATCTCTCCTGTTTGTTCATTTGATTTGGGCCccatttcatgttgttttcaaaacaacatttcgTGTAAATTCATCTATCTTCGCTGAAGAATGAGCGACAACGATGATATCGAGGTCGATAGTGATGCAGACAAACGGGCACATCACAATGCGCTGGAGCGCAAACGTAGGGACCACATCAAAGACAGCTTTCACAGCCTTCGGGATTCCGTTCCCGCCTTGCAAGGGGAAAAGCAATCTATCAAACAGGCATCCCGAGCTCAAATCCTAGACAAAGCCACAGAGTACATCCAGTACATGCGACGGAAAAACCACACACACCAGCAGGACATCGACGACCTGAAGAGGCAGAACGCTCTGCTGGAGCAGCAAGTACGGGCACTGGAGAAAGTCAAGGGGACCACACAGCTGCAGGCCAACTACTCCTCTTCAGACAGCAGCCTGTACACCAACCCCAAGGGCAGCGCTGTATCGGCCTTCGACGGTGGTTCCGACTCGAGCTCGGAGTCCGAGCCGGAGGAACAGCGTTCCCGGAAGAAGCCCCGTGGAGAGGACAGCTAAACATCGGATCCTCGGCCCGCTCCACAAAGTTCTCCTCTGAGGGGAGGGAGAGTTACAGCAATGGTctgtttcttgttgttttttgtgtacCTCAATTGCCCCAAACCTCCTTGATCAATCTCTTTCAGTGAATGTCAACCCTCGATTCCTCGCCTGAAGAAACCTCCGCCAGGTTTACAAGAGAGAGGGACGTCTGTTACGGGAAGAACACTCACAGAAAACACGGCTTGTTTTtactctccctccctctctgttCGTCCATCTTGCGTCCTGGCACACGCAACAACAAACGATGATTTAAACCCAAAATGAGGCAGCTTTGCAACTTAAGGACTtgatgctttgtttttgttttttttgtaccctTGTCTGCAATCCCTCCAGGTGGATATACAAAGGGTTGATTGAGGCGTACAGCTCCTAGCActgctaaaatataatttttttttttgttgaatatcTTAAAGCCTGCTTAGAACTTACCCTTAGCTGAATTGTCCCGAGTGGTTTGcctttctaaatatatttgttacttTTCCATAAAGGAATGTTTTTGAAGCATCTATCAATGTACCCCTTGTTAGACCTATGGGATGAGAGATACGTTTTGACGTTATCGATAAAGtcccttatttaaaaaatacaaaaaaacaaaaaaaaatgctttatggGAAGGCTGCTGAGCTTgtgttgtatttgttgttttagcCTGATGTAGTAAAGTTTACAGgtcggggaaaaaaaaaaagagattttcatttaaaggggataaaaaaaaaaaaaaagtgataaagcatatattttgcATCTGTCATCTGAGCCTCCcaaacatgtattttatgtatttcactCCATATTGGGAATATAAACGTTCCAAATGATGTTTCCCCCCACAAAGCTAGTCAATATCGAAAGAGTAGATTCATGTCGTGACTTTTAAAGGTAAATGTTCTAAATGTTCATCGGAAATTTGACCGCTGCACACCACAAAAGTTGCATTTTGAGTGTCTAGGAGACatgagtgtgtgcgtgtatcTTTTATCATATTTTCCACTTAGTACATTAGTAAACTGAGTAGGTCTTTCTTTGTCTGATTCCATTCCATGGAAATTACAGGTATGTTGTACATACTGCCAACAGTTGTCTTGCAAGTTGAGGCCTACCTTTACAatgagaatataaataaaactattttatccTTTA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071339 MLL1 complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247215.1 lncRNA downstream 153389 14839057 ~ 14843736 (-) True LOC122324712
TU204663 lncRNA downstream 203416 14793495 ~ 14793709 (-) True G138627
TU204596 lncRNA downstream 418224 14578701 ~ 14578901 (-) True G138579
TU204567 lncRNA downstream 472102 14524732 ~ 14525023 (-) True G138562
TU204529 lncRNA downstream 568873 14426959 ~ 14428252 (-) True G138537
TU204946 lncRNA upstream 320372 15323572 ~ 15324280 (-) True G138812
TU204944 lncRNA upstream 328601 15331801 ~ 15347281 (-) True G138811
TU204970 lncRNA upstream 367408 15370608 ~ 15380969 (-) True G138828
TU204996 lncRNA upstream 513643 15516843 ~ 15517070 (-) True G138853
TU205007 lncRNA upstream 680976 15684176 ~ 15711053 (-) True G138862
XM_043220400.1 mRNA downstream 12269 14976262 ~ 14984856 (-) True rab15
XM_043219434.1 mRNA downstream 25837 14907899 ~ 14971288 (-) False sipa1l1
XM_043219410.1 mRNA upstream 6300 15009500 ~ 15015269 (-) False srsf5b
XM_043219133.1 mRNA upstream 12637 15015837 ~ 15036887 (-) True susd6
XM_043219134.1 mRNA upstream 12637 15015837 ~ 15036884 (-) False susd6
XM_043219438.1 mRNA upstream 75774 15078974 ~ 15089573 (-) True thbs1b
XM_043219958.1 mRNA upstream 163206 15166406 ~ 15175414 (-) True chrm5b
TU204531 other downstream 551281 14443592 ~ 14445844 (-) False LOC122324589
TU204189 other downstream 1305118 13664506 ~ 13692007 (-) True G138285
XR_006247291.1 other downstream 1560774 13425475 ~ 13436351 (-) False cracd
TU203701 other downstream 2750115 12246222 ~ 12247010 (-) False mdn1
TU203715 other downstream 2772855 12222810 ~ 12224270 (-) True G137949
XR_006247368.1 other upstream 287075 15290275 ~ 15290410 (-) True LOC122325630
XR_006247360.1 other upstream 718846 15722046 ~ 15722265 (-) True LOC122325621
XR_006247362.1 other upstream 719350 15722550 ~ 15722769 (-) True LOC122325623
XR_006247355.1 other upstream 719863 15723063 ~ 15723283 (-) True LOC122325616
XR_006247351.1 other upstream 720810 15724010 ~ 15724230 (-) True LOC122325612

Expression Profile