RNA id: TU204944



Basic Information


Item Value
RNA id TU204944
length 1106
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G138811
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15331801 ~ 15347281 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tcttttttttttttttttttttactttTATGGTTTATAAAATGGTCATTTTAATTCTTGTTACATAGCTGTTATGTAGGGCTTGTACATTTTCACAAGGCTTTTGGGGGGACTACAGTCAATGATTAGCAAAAACACAAGTGGTCCAAATAACTATTGACATCACTTGACAAATCAAACATCCTCTCAACATGTGCATAAACCTGCAATGAAAAGTACTTAACCAAACTGTGGAACAAGTATGCAGTATTGGTTCCCATTCCAGTGTATATTGAAAAATGGGCAtgcatgatattttaaattttttttccatttttttttctctttatatcaTCACAAGCCATCGCAAGGTAACACATTATAGTGAAAACCATAACCAGGCAGGAGTGTTTGTGACCTTCATGATGAAGATATGATTTAAATGGTCTATGAAAAGTGCATACTTGGCTGAGCAAAGCTAGCTGACTTGATACATCAGACAGCAGCCTTCCAATACTAAAGCACAGGCCCATTTTAAGCCAACACTATGACGGTCAACAAGACATTTATCTCATTCAAGTGTAACGCTGATCTCCCTAGAGAGACATATAATGGAAGGTGATATAGCAGGACAGGAACTAGCCATGCTTGAGGCAAAACGTTTTGCATTTTGTGACCGACACTTCCAATGTTTCAGTTCACCAGAATATACACACTAGTCGCTTTGTCACAATTAAAGGACAATTGATTTTATGTGAGGCTAATACTTTTCTACAGCAGACACTGCACATATAGAAGGCCAAAGGACAAAAACACGAAACCGAGGAGTGGAAATGTTACTTTAACTTAATATTTACTTTCATTACAACCACAAGCCAGGTGGTGGAAAacggaggaggaaaaaaaaaaaaaaatgactgattggAATTCCACACTCACAGCTCATTGGTAATGATCATGGGCTTACATGGCTAGAATAATCATAAGTGAAACAATAAGGAATGAAGAAGTGTAAAAAGTCGTctttttccaggattctttttctttcatttgtggaCTGATGTGGGTGTTTAGTTCTCTCCTCCGTCTCCTCCTTCACCCTCATCTGCAGCGTTGTCAGAGGTCcat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU204946 lncRNA downstream 7521 15323572 ~ 15324280 (-) True G138812
TU204880 lncRNA downstream 328612 14997143 ~ 15003189 (-) False max
TU204882 lncRNA downstream 328612 14997143 ~ 15003189 (-) True max
XR_006247215.1 lncRNA downstream 488065 14839057 ~ 14843736 (-) True LOC122324712
TU204663 lncRNA downstream 538092 14793495 ~ 14793709 (-) True G138627
TU204970 lncRNA upstream 23327 15370608 ~ 15380969 (-) True G138828
TU204996 lncRNA upstream 169562 15516843 ~ 15517070 (-) True G138853
TU205007 lncRNA upstream 336895 15684176 ~ 15711053 (-) True G138862
TU205116 lncRNA upstream 469639 15816920 ~ 16190659 (-) True G138922
TU205130 lncRNA upstream 645262 15992543 ~ 15993096 (-) False LOC122325494
XM_043220515.1 mRNA downstream 24518 15302806 ~ 15307283 (-) True taf1b
XM_043218591.1 mRNA downstream 33893 15294518 ~ 15297908 (-) True klf11a
XM_043218576.1 mRNA downstream 39546 15288771 ~ 15292255 (-) True LOC122324271
XM_043220336.1 mRNA downstream 47508 15281002 ~ 15284293 (-) True actc1a
XM_043220353.1 mRNA downstream 51373 15278218 ~ 15280428 (-) True LOC122325338
XM_043219479.1 mRNA upstream 18677 15365958 ~ 15370030 (-) True e2f6
XM_043219480.1 mRNA upstream 18677 15365958 ~ 15370028 (-) False e2f6
XM_043218710.1 mRNA upstream 69686 15416967 ~ 15418769 (-) True id2b
XM_043219875.1 mRNA upstream 91456 15438737 ~ 15452011 (-) True rnf144ab
XM_043219877.1 mRNA upstream 91457 15438738 ~ 15452008 (-) False rnf144ab
XR_006247368.1 other downstream 41391 15290275 ~ 15290410 (-) True LOC122325630
TU204892 other downstream 316618 14993099 ~ 15015183 (-) True srsf5b
TU204893 other downstream 316618 14993099 ~ 15015183 (-) False srsf5b
TU204531 other downstream 885957 14443592 ~ 14445844 (-) False LOC122324589
TU204189 other downstream 1639794 13664506 ~ 13692007 (-) True G138285
XR_006247360.1 other upstream 374765 15722046 ~ 15722265 (-) True LOC122325621
XR_006247362.1 other upstream 375269 15722550 ~ 15722769 (-) True LOC122325623
XR_006247355.1 other upstream 375782 15723063 ~ 15723283 (-) True LOC122325616
XR_006247351.1 other upstream 376729 15724010 ~ 15724230 (-) True LOC122325612
XR_006247350.1 other upstream 495117 15842398 ~ 15842618 (-) True LOC122325611

Expression Profile