RNA id: XM_043220533.1


Basic Information

Item Value
RNA id XM_043220533.1
length 1470
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC122325494
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15990149 ~ 15993645 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAATGTGAACAGAAGCTTCCTGGTATGTCTCACTAATTGAATGCACCTTAATGATTCGTTAAAGTTATAAAGTGTTAGCAAAGTTGTGTTCTCGGGTCAGAGGCATCAGTCAAGGTTCATAAAGAGTGGACTGTCAAAGTTTCCTCCCTCCACTACGCGTCCATACGGCAGCAGTGTTGTTCTTGGCTTTCAGAGCAGCTCACGAGACCCACCGGCGAATTCCACACGAGTCCACGTAAACTCGTCACATGAGGCCTTTCGTTGTCCCACAATGACAGCAGTCACCAAAACCGATGGAGGAGTGGAAGAACCTGCGGATTCGACAAAGCATTAGATCTTAAAATACCAGTCTTACATTTCATTACCCAAGCTATAAAGTCAACAAATGATATGCAGCTTAATCTAAATGCATGAGTTTACTGTTGATGGATGGAGCATTTGGCATTCTTATAAGGATTCTATCACACAGAAATGTCTGCtcgtaaaatgtaatatgcacaGTACGATGGCAGGTgcctttctatttatttgttttattgaactTTTTAGGGAGATTTGCTGCTGGCCACGGATCTCTAGCACCCAGAGCTCTACCGTTCCCGAGCCGGGTTGTTTATAACAGGGTGGGGAAGTGTGGCAGTCGTACTATAGTTCTGCTGCTGCGCATGCTAGCCGACAGACATGAGTTCACCCTCATCTCCTCTGACATACACAACAAGACCAGGCTCACCAAACGGGAACAGGAAAATCTGATTAGAAACATCAGCACGACTCCTCAGCCATTTCTTTATACCCGACACGTGCATTTTCTCAATTTTAGCAGGTTCAGAACGGATGAGCCCGTGCACATCAACGTCATCCGAGATCCCATCAACCGGTTCCTGTCCAATTATTTCTTCCGCCGCTTCGGAGACTGGAGGGGTGAAGAGAATCACGTGGTCCGGACGCCTGGGATGAAAGACGACGAGAGATACTTGGACATCAACACGTGCATCTTGGAAAGTTACCCAGAATGCTCGAACCCCCGGCTCTTCTACATTATCCCGTATTTCTGTGGGCAGCATCCTCAGTGCAGAGAGCCAGGTTTGTGGGCTCTGGAGACGGCCAAGAGGAACGTTCTGGATCATTACCTGCTGGTAGGAGTGCTGGAGGAACTTGAAGATGTGCTGCTTCTGCTGGAGAGACTCCTTCCGCACTTCTTCTCTGACGTCTTGAACATCTACAAAAGTCCAGGAGGATCATTTGAGAGGCTCGTGCTGGAGTCTGACCCTGGAGCCGGGGTTTGCACTCACCGTGATCTTCGAGGCATAAGTCTGCCATTCACCTGCGGCCTGGATCTGCCCGGTGATATCATCAGATGTGACGGTGAAGCAGAGTGGGAAACTCTGTACTTCGGTGTTGACTACAGGATTTTATCCAATGGGGAAAGCAGCTCTCTTAGTAATGCAAAGATTGGCGTTACATGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205007 lncRNA downstream 279096 15684176 ~ 15711053 (-) True G138862
TU204996 lncRNA downstream 473079 15516843 ~ 15517070 (-) True G138853
TU204970 lncRNA downstream 609180 15370608 ~ 15380969 (-) True G138828
TU204944 lncRNA downstream 642868 15331801 ~ 15347281 (-) True G138811
TU204946 lncRNA downstream 665869 15323572 ~ 15324280 (-) True G138812
TU205173 lncRNA upstream 213425 16207070 ~ 16208001 (-) True G138956
TU205179 lncRNA upstream 220699 16214344 ~ 16216716 (-) True G138960
TU205207 lncRNA upstream 329761 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA upstream 331017 16324662 ~ 16325753 (-) False G138983
TU205285 lncRNA upstream 456881 16450526 ~ 16451893 (-) True G139029
XM_043219007.1 mRNA downstream 67292 15919584 ~ 15922857 (-) True LOC122324514
XM_043220492.1 mRNA downstream 144672 15842203 ~ 15845477 (-) True LOC122325442
XM_043220182.1 mRNA downstream 468366 15519210 ~ 15521783 (-) True sox11b
XM_043219875.1 mRNA downstream 538138 15438737 ~ 15452011 (-) True rnf144ab
XM_043219877.1 mRNA downstream 538141 15438738 ~ 15452008 (-) False rnf144ab
XM_043219006.1 mRNA upstream 197 15993842 ~ 16001170 (-) True LOC122324513
XM_043219002.1 mRNA upstream 23673 16017318 ~ 16104722 (-) True LOC122324507
XM_043219000.1 mRNA upstream 33114 16026759 ~ 16104727 (-) False LOC122324507
XM_043218999.1 mRNA upstream 33117 16026762 ~ 16104725 (-) False LOC122324507
XM_043219001.1 mRNA upstream 33118 16026763 ~ 16104723 (-) False LOC122324507
XR_006247359.1 other downstream 68197 15921733 ~ 15921952 (-) True LOC122325620
XR_006247353.1 other downstream 69148 15920781 ~ 15921001 (-) True LOC122325614
XR_006247357.1 other downstream 69648 15920281 ~ 15920501 (-) True LOC122325618
XR_006247354.1 other downstream 70149 15919780 ~ 15920000 (-) True LOC122325615
XR_006247352.1 other downstream 145575 15844354 ~ 15844574 (-) True LOC122325613
TU205141 other upstream 34608 16028253 ~ 16036253 (-) False LOC122324507
TU205229 other upstream 368486 16362131 ~ 16363312 (-) False fndc1
TU205232 other upstream 371165 16364810 ~ 16365467 (-) False fndc1
TU205233 other upstream 371165 16364810 ~ 16366772 (-) False fndc1
TU205287 other upstream 461823 16455468 ~ 16462216 (-) True G139030

Expression Profile